| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2351 |
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| Symbol | |
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| ID | 4604601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2824025 |
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| End bp | 2825533 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781749 |
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| Product | putative transglycosylase |
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| Protein accession | YP_928226 |
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| Protein GI | 119775486 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0115829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.881072 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCGGG TAGAATTGCG CCGTTTTCGA CCAGTCTTGA CTGAATTTCC TGGGGTTAAT
TTATTGATTA GATTAAGACG AGTCCTTTTT CTGCTGACGA GTGTACTGGT GCTGACAGCC
TGTCAGCCAC CAGGCCTTGT TGTGGACGCA CCACAACCCA AAGCAGAAGC CGAGACACTT
CGCGTGGGCA CCCTGTACGG TGCACAGATC TACATGAGTT CGGGCCAGGG CCTGTCCGGC
TTTGATTATG AGCTGGCCCA GAAGTTTGCC GACTATTTGG GTAAACCTTT GGAAATGCAG
CCATACAGCA ACAGAAGCGA GCTTTATGAT GCGTTGGCCA AAGGCGAAAT TGACCTGATT
GCCGCCGGTA TCACCGAAAG CCCCAACCGC CGCAATCGTT TTCGTATGGG ACCGCCCCTT
TACCGGGTGG ACCAGGTAGT GGTGTACCGT CAGGGTAACA GGGCGCCGGA ATCCATAGAA
CAGCTCAGCG GCAATCTCAC TGTGGTGGCC GATTCGGCGT TTGTGGAAAC CCTCACGAGG
CTGCAGCAAA CCCATACAAA TCTGAGCTGG GAGCAAACCA GCGAAAAAGA CAACGACGAG
CTCATTGCCA TGATTGCCAG TGGCGAGCTC AATTACACCC TGGCGCAATC AACCAGTCTG
GACATTAACC GCCGCTATAT GCCGGAGCTC AGAAGCGGCC TGGTGCTGGA GGAAAAGGTA
CCTGTGGTCT GGCTGTTGCC TGCTCAAAAT AGCGATGCCC TGATGAGCAA GCTGCTGGCC
TTCTGGCACC AGGAAAAACG TGCCGGCACC CTGGCCCATC TCAATGAAAA ATACTTCGGC
CACGTGAAGC GTTTCGATTA TGTCGACACC CGCGCTTTTA TCCGCGCCAT CGATGCCAAA
CTGCCCCGTT ACCGGCCTTT GTTTGAAGAA TATGCCGGTG ATTTGGACTG GCGAAAGCTG
GCCGCAGCCA GTTATCAGGA GTCACACTGG AACCCCAATG CCCGCTCTCC TACCGGGGTA
CGTGGCATGA TGATGCTGAC CAATGCCACC GCCAGCCAGT TGGGGGTGAC CAATCGCCTC
GACCCGCGCC AAAGCATCCG TGGTGGCGCC GATTATCTGC GGGACTTGAT AAATCGCCTG
CCGGAATCCA TCCCCGAAAA TCAGCGGATG TGGTTTGCGC TGGCCGCCTA CAACATAGGT
TTGGGTCATT TGGAGGATGC ACGCAGGCTG GCTGAAGCGC AGGGGCTAAA TCCCAGCGCC
TGGCGGGATG TGAAACAGGT ATTGCCATTG CTGCAAAAAA GGAAGTTTTA CAGCCAAACC
CGTTATGGTT ATGCCAGAGG CGGTGAAGCT GTGCACTATG TGGACTCCAT CCGCCGCTAT
TACGACACTC TGGTTTGGGT CGACAATCAA AAACCCAAAG ATGAGCCACA GCTTCCGGAT
GAAATTCAGG TAGAAGAAAC CGCCGCCAGC AGTGGCGCAG AGCCACCAAC CGCGGCTCCC
CGCGAATAA
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| Protein sequence | MHRVELRRFR PVLTEFPGVN LLIRLRRVLF LLTSVLVLTA CQPPGLVVDA PQPKAEAETL
RVGTLYGAQI YMSSGQGLSG FDYELAQKFA DYLGKPLEMQ PYSNRSELYD ALAKGEIDLI
AAGITESPNR RNRFRMGPPL YRVDQVVVYR QGNRAPESIE QLSGNLTVVA DSAFVETLTR
LQQTHTNLSW EQTSEKDNDE LIAMIASGEL NYTLAQSTSL DINRRYMPEL RSGLVLEEKV
PVVWLLPAQN SDALMSKLLA FWHQEKRAGT LAHLNEKYFG HVKRFDYVDT RAFIRAIDAK
LPRYRPLFEE YAGDLDWRKL AAASYQESHW NPNARSPTGV RGMMMLTNAT ASQLGVTNRL
DPRQSIRGGA DYLRDLINRL PESIPENQRM WFALAAYNIG LGHLEDARRL AEAQGLNPSA
WRDVKQVLPL LQKRKFYSQT RYGYARGGEA VHYVDSIRRY YDTLVWVDNQ KPKDEPQLPD
EIQVEETAAS SGAEPPTAAP RE
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