Gene Sama_2308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2308 
SymbolflgL 
ID4604558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2773090 
End bp2774295 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content51% 
IMG OID639781705 
Productflagellar hook-associated protein FlgL 
Protein accessionYP_928183 
Protein GI119775443 
COG category[N] Cell motility 
COG ID[COG1344] Flagellin and related hook-associated proteins 
TIGRFAM ID[TIGR02550] flagellar hook-associated protein 3 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.24261 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTATTT CTACCTCGCA AATGTTTACC CAGAACACCA ATAACATACT GCAAAAGCAG 
ACAGAGACCG CGAAGCTGCT CGAACAGCTG TCCAGTGGCA AGAAGGTGAA TACCTCGGGT
GACGACCCTG TGGCGGCCTT GGGTATCGAC AATCTCAACC AGCAGCAGGC GCTGGTGGAT
CAATTTCTGA AGAACATCGA CTACGCCAAA AATCATTTAG GCATTGCCGA GAGTAAGCTT
GGCAGCGCCG AGGAGTTGGT TACCGGTTTA CGAGAACAAA TTCTGCGCGG GGTAAATGGT
GGCCTTTCGC CCTCCGAGCG GCAAATGATT GCCGATGAGA TGCGTGGCAG CCTGCAGGAA
TTGCTGAATG TGGCAAACAC CCGGGATGAG TCCGGCAACT TTATGTTCTC CGGTTTTAAA
ACAGACACAG AACCCTTTGC CTTCGACGGT GCCGGCAACA TGGTTTATAG CGGTGATGCC
GGCGTGCGTG ACGCCATGAT TTCCCGTGGC ATCGCCATGG GCACCAATGT GCCCGGCGAT
ATGGCGTTTA TGACGTCGCC CAACGCACTT GGCGATTATA CCGTCAATTA TTTGTCGAGC
CAGGCAGGTG ATTTTAAGGT TCAAAGCGCT GCGATAACCA ACCCAGCAGC TCATGTGGAA
GACACTTATA CCTTTAATTT TATTGATAAT GGTTCAGGCG GCGTAAACCT GGAAGTGCGT
GACAGTGCCA ATGGGCTGGT CACCACAGTG AACAACTTTG ATGCCACCAA TCCTGTTAGT
TTCAACGGAA TAGACGTCAA GCTGGAAGGC ACACCAGCCG CTGGCGACAG TATTTCCCTG
GCTCCTCAGG CTGAAGTCAG CATTTTCGAC ACCATTAATA AGGCTATCGC CCTGATAGAA
GACGATAGTC GCATGAATTC TCCCGCTGGT ATCGCAGAGT TGGCACAGCT CTTGAATGAC
ACTGACAGCG GATTGAATCA GCTCAGCACC GCCAGAAGCG TGGCAGGTAA TAACCTCAAG
AGTCTTGAGA GTTACGCCGG ACGACACGCA GAAGAGCAGG TCGTCAATAC CTCGGCGCTG
TCATTGCTGG AAGATCTGGA TTACGCAACG GCGATTACGG AATTTGAAAA GCAGCAGCTT
GCATTGAACG CAGTCTCCAA TGTGTTTAGC AGAGTTGGTT CTGTGTCTTT GTTCGACTAC
TTGTAG
 
Protein sequence
MRISTSQMFT QNTNNILQKQ TETAKLLEQL SSGKKVNTSG DDPVAALGID NLNQQQALVD 
QFLKNIDYAK NHLGIAESKL GSAEELVTGL REQILRGVNG GLSPSERQMI ADEMRGSLQE
LLNVANTRDE SGNFMFSGFK TDTEPFAFDG AGNMVYSGDA GVRDAMISRG IAMGTNVPGD
MAFMTSPNAL GDYTVNYLSS QAGDFKVQSA AITNPAAHVE DTYTFNFIDN GSGGVNLEVR
DSANGLVTTV NNFDATNPVS FNGIDVKLEG TPAAGDSISL APQAEVSIFD TINKAIALIE
DDSRMNSPAG IAELAQLLND TDSGLNQLST ARSVAGNNLK SLESYAGRHA EEQVVNTSAL
SLLEDLDYAT AITEFEKQQL ALNAVSNVFS RVGSVSLFDY L