| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2297 |
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| Symbol | fliF |
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| ID | 4604547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2762018 |
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| End bp | 2763715 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781694 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_928172 |
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| Protein GI | 119775432 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCACAG ATATGATTGT CAGCACCGAC AGCGGCATGA GCGGTGTACA ACAGGAAAAT
AAATCCGGGG TGCTGGGTAA CCTCGGCAGC GCCGATATGC TCAGACAGGT CACCATGATC
CTGGCCCTTG CCATCTGTCT GGCATTGGCG GTGTTTGTGA TGATGTGGGC ACAGGAGCCT
GAATACCGTC CATTGGGTAA GTTTGAAGCC CAGGAAATGA TCCAGGTGCT GGATGTGCTC
GATAAAAACA AAATTCCCTA TCAGGTGGAT TTTGATGTGC TGCGAGTCCC GGAAGATAAG
TATCAAGACA TCCGGCTGCT TTTGAGCCGT AACGGTGTGG ATGCTGCCAG TACCACCAAT
CAGGATTTTC TGAGTCAGGA CATGGGCTTT GGCGTAAGCC AGCGTCTGGA GCAGGCCCGA
CTCAAGCACA GCCAGGAGCA AAACCTCGCC CGCACCATCG AAGAGCTGAA AAGCGTCAGC
CGTGCCAAGG TGATCCTGGC GCTGCCCAAA GAAAACGTGT TTGCCCGTAA CCAATCCAAG
GCCAGTGCCA CTGTGGTCGT CACCAGTCGT CGTGGCGGTC TGGGGCAGGA AGAAGTGGAT
GCCATAGTCG ATATAGTGGC GTCCGCCGTA CAGGGACTCG AGCCTACCCG GGTGACGGTA
ACCGATTCCA ACGGTCGTTT GCTGAACTCC GGCAGCCAGG ACGGCGCTTC TGCCCGTGCC
CGCCGTGAAC TCGAGCTCGT CAAACAAAAA GAAGCCGAAT ACCGTGCCAA GGTTGATGCC
ATACTGATGC CCATTTTGGG CCCGGAAAAT TACACCTCCC AGGTGGATGT GACCATGGAC
TTTACTGCCG TGGAACAAAC GTCCAAGCGT TTCAACCCGG ATCTGCCTGC GGTGCGCAGC
GAAATGACCC TGGAAACCCA AACCAGCGGT GAAGCCAACA TGGGGATCCC CGGTGCGCTC
TCGAATCAGC CGCCGATGGA GTCAAACATT CCTCAAACCC TGCAGGAAGC GCAGGATAAG
GCCCAGGCCA ACGGAAATTC ACACCGTGAA GCGACCCGTA ACTACGAGCT GGACACCACC
ATCAGCCATA CCCGTCAACA GATTGGCGTG GTGCGCCGGG TAAGTGTATC TGTGGCGGTG
GACTATAAAA CCGGTGAAGC CAATACCGAA GGTCAGGTGA ATCGTGTAGC CCGCACCGAG
GCCGAGCTTG CCAATATTCG CCGTCTGCTT GAGGGCGCTG TGGGGTTCAG CGGTCAACGC
GGTGACAGCA TAGAAGTCGT CACTGTTCCC TTTATGGATC AGCTTGTTGA GGAAGTGCCA
GAGTTGCCTA TGTGGGAGCA ACCCTGGTTC TGGAAGGCCA TGAAACTGGC ATCCGGCTCT
CTGGCCATCC TGGTGCTCAT TCTCTTTGTC GTGCGGCCAC TGCTGAAGAA ACTGCTGCTC
ACCGACAAGG TCGATATGCC TGACGATGGC CGCCTGGGTC ATGAACTGGC TGAGATTGAA
GATCAGTTCG CCGCAGACAC TTTGGGCATG CTCAATGCCA GCGATGCTGA GTACAGCTAT
GCGGATGATG GTTCGATTCT CATCCCGAAT CTGCACAAAG ATGATGATAT GATTAAGGCT
ATCCGCGCTC TGGTTGCCAA CGAACCTGAG CTTTCCACTC AAGTCGTGAA AAATTGGTTG
CAACAGGACA ATGGCTGA
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| Protein sequence | MSTDMIVSTD SGMSGVQQEN KSGVLGNLGS ADMLRQVTMI LALAICLALA VFVMMWAQEP
EYRPLGKFEA QEMIQVLDVL DKNKIPYQVD FDVLRVPEDK YQDIRLLLSR NGVDAASTTN
QDFLSQDMGF GVSQRLEQAR LKHSQEQNLA RTIEELKSVS RAKVILALPK ENVFARNQSK
ASATVVVTSR RGGLGQEEVD AIVDIVASAV QGLEPTRVTV TDSNGRLLNS GSQDGASARA
RRELELVKQK EAEYRAKVDA ILMPILGPEN YTSQVDVTMD FTAVEQTSKR FNPDLPAVRS
EMTLETQTSG EANMGIPGAL SNQPPMESNI PQTLQEAQDK AQANGNSHRE ATRNYELDTT
ISHTRQQIGV VRRVSVSVAV DYKTGEANTE GQVNRVARTE AELANIRRLL EGAVGFSGQR
GDSIEVVTVP FMDQLVEEVP ELPMWEQPWF WKAMKLASGS LAILVLILFV VRPLLKKLLL
TDKVDMPDDG RLGHELAEIE DQFAADTLGM LNASDAEYSY ADDGSILIPN LHKDDDMIKA
IRALVANEPE LSTQVVKNWL QQDNG
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