Gene Sama_2280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2280 
SymbolfliA 
ID4604530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2745826 
End bp2746545 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content50% 
IMG OID639781677 
Productflagellar biosynthesis sigma factor 
Protein accessionYP_928155 
Protein GI119775415 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0133422 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.62617 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATAAAG CCGCGGCGTA TACCTCCATG GAGAGTAAAA CCTCCATCGT TGAACAGTAC 
GCACCGCTGG TTAAAAGAAT CGCGCACCAT ATGTTGGCCA GATTGCCGGC ATCCGTACAG
TTGGACGACT TGCTGCAGGC GGGCATGATT GGCCTGCTTG AGGCATCGGC CAAATTTGAC
GGCGGCAAAG GCGCCAAGTT TGAAACCTTT GCTGGCATTC GTATTCGTGG TGCCATGTTG
GATGAAATCC GTAAAGGTGA TTGGGTTCCA CGTTCTGTTC ACCGTAATCA GCGCAGAGTC
GCCCAGGTGA TAGACGAACT GGAACAAGAG CTCGGACGTG ATGCCCGGGA CACAGAAATT
GCCGAAAGAC TTGATATGTC GATGGAGGAA TACCATCATA TCCTCAATGA TGTTTCTGTT
GGTAAAATCA TAGGGATAGA AGATTTAGGC GTATCACATG ATGTTCTGGT TCCCGACGGG
GAGCAAACCA ACGACATTTA TGATGACCTG GCTCAGAGCC AGTTCCAGCA GGCCTTGGCA
GATGCCATTC GCCAGTTACC CGAGCGGGAC GCGCTGGTGT TATCACTTTA TTACGATGAA
GCACTGAATT TAAAAGAAAT AGGCGCCATT CTTGATGTGA GTGAGTCGCG GGTATGCCAG
ATCCACAGTC AGGCTATGCT CAGGCTCAAA GGTAAGCTCA AGCATTGGAC ACAAGTATAA
 
Protein sequence
MNKAAAYTSM ESKTSIVEQY APLVKRIAHH MLARLPASVQ LDDLLQAGMI GLLEASAKFD 
GGKGAKFETF AGIRIRGAML DEIRKGDWVP RSVHRNQRRV AQVIDELEQE LGRDARDTEI
AERLDMSMEE YHHILNDVSV GKIIGIEDLG VSHDVLVPDG EQTNDIYDDL AQSQFQQALA
DAIRQLPERD ALVLSLYYDE ALNLKEIGAI LDVSESRVCQ IHSQAMLRLK GKLKHWTQV