Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2280 |
Symbol | fliA |
ID | 4604530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2745826 |
End bp | 2746545 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639781677 |
Product | flagellar biosynthesis sigma factor |
Protein accession | YP_928155 |
Protein GI | 119775415 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0133422 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.62617 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATAAAG CCGCGGCGTA TACCTCCATG GAGAGTAAAA CCTCCATCGT TGAACAGTAC GCACCGCTGG TTAAAAGAAT CGCGCACCAT ATGTTGGCCA GATTGCCGGC ATCCGTACAG TTGGACGACT TGCTGCAGGC GGGCATGATT GGCCTGCTTG AGGCATCGGC CAAATTTGAC GGCGGCAAAG GCGCCAAGTT TGAAACCTTT GCTGGCATTC GTATTCGTGG TGCCATGTTG GATGAAATCC GTAAAGGTGA TTGGGTTCCA CGTTCTGTTC ACCGTAATCA GCGCAGAGTC GCCCAGGTGA TAGACGAACT GGAACAAGAG CTCGGACGTG ATGCCCGGGA CACAGAAATT GCCGAAAGAC TTGATATGTC GATGGAGGAA TACCATCATA TCCTCAATGA TGTTTCTGTT GGTAAAATCA TAGGGATAGA AGATTTAGGC GTATCACATG ATGTTCTGGT TCCCGACGGG GAGCAAACCA ACGACATTTA TGATGACCTG GCTCAGAGCC AGTTCCAGCA GGCCTTGGCA GATGCCATTC GCCAGTTACC CGAGCGGGAC GCGCTGGTGT TATCACTTTA TTACGATGAA GCACTGAATT TAAAAGAAAT AGGCGCCATT CTTGATGTGA GTGAGTCGCG GGTATGCCAG ATCCACAGTC AGGCTATGCT CAGGCTCAAA GGTAAGCTCA AGCATTGGAC ACAAGTATAA
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Protein sequence | MNKAAAYTSM ESKTSIVEQY APLVKRIAHH MLARLPASVQ LDDLLQAGMI GLLEASAKFD GGKGAKFETF AGIRIRGAML DEIRKGDWVP RSVHRNQRRV AQVIDELEQE LGRDARDTEI AERLDMSMEE YHHILNDVSV GKIIGIEDLG VSHDVLVPDG EQTNDIYDDL AQSQFQQALA DAIRQLPERD ALVLSLYYDE ALNLKEIGAI LDVSESRVCQ IHSQAMLRLK GKLKHWTQV
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