| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2211 |
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| Symbol | |
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| ID | 4604461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2671808 |
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| End bp | 2673208 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639781608 |
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| Product | C4-dicarboxylate transport protein |
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| Protein accession | YP_928086 |
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| Protein GI | 119775346 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATAG CCACGCTGTT TTTAACCCTG TTCCTGTGCA TGCTGCTCGG TATGCCCATC
GCCATCGCGC TGGGATTTTC GAGCATGCTG ACCATATTGC TGTTTTCCAA CGACTCTCTG
GCATCAGTTG CCCTTAAACT CTACGAAGCC ACCTCAGAGC ACTACACCCT GCTGGCGATC
CCCTTCTTTA TTCTGTCGTC TGCGTTTCTC TCCACCGGTG GCGTGGCACG GCGAATTATC
GATTTTGCCA TGGACAGTGT CGGCCACATT CGCGGAGGCC TCGCCATGGC GTCGGTGATG
GCTTGTATGC TGTTTGCCGC GGTATCGGGT TCGTCTCCTG CCACTGTCGC GGCCATTGGA
TCTATCGTGA TTGTGGGCAT GGTACGCGCA GGCTACCCGC AAAAGTTTGC CGCCGGGGTG
ATTACCACCT CGGGTACACT GGGGATCCTT ATTCCTCCCT CAATCGTGAT GCTGGTGTAT
GCGGCTGCGA CCGAGGTGTC GGCCGCACGT ATGTTTATGG CAGGACTCAT CCCCGGACTC
CTGATGGGTG TGCTGTTGAT GGTGGCCATT TACATTGTCG CCCGCATTAA AAATCTTCCC
TCCCGCCCCT TCCCCGGCGT AAAAGCCCTG TCGCTTTCCA GCGCCAAGGC CATGGGCGGA
TTGGCACTGA TTTTCATCGT GCTGGGCTCC ATTTACGGCG GTGTGGCGAG CCCAACCGAG
GCGGCGGCAG TGGCCTGCGT GTACGCCTAT CTGGTCGCGG TGTTTGGCTA TCGCGACATA
GGCCCACTCA AAGAGGTGCC ATGGCGCAAA GAAGGTGAAG CCATACTCGC TGCGATAGTT
CGCAACCTGC TTCACGTGGG GCTGGGGCTC ATCAAGACCC CCACCGACAA AGAAATCCGC
AACGTGGTAA GGGATGGCGC CAAAGTCAGC ATCATGCTGC TATTTATCAT CGCCAATGCC
ATGCTGTTTG CCCACGTGCT GACCACTGAG CGGATTCCGC ACATCATCGC TGAAACCATC
GTCGGCTGGG GTCTGCCGCC CTGGGGCTTC CTGATTATTG TGAACCTGCT GTTGCTGGCG
GCCGGAAACT TTATGGAACC TTCAGCCATT CTGCTTATCA TGGCCCCCAT TTTGTTCCCC
ATCGCCGTGC AGCTCGGTAT CGACCCGATT CACCTGGGGA TCATCATGGT GGTGAACATG
GAGATCGGTA TGTTAACGCC ACCGGTGGGG CTGAATTTGT TTGTGACAGC TGGCATCACA
GGCCGCAGCA TTGGCTGGGT CATCCATGCG TGCCTGCCTT GGCTGCTGTT GCTGCTGGGC
TTCCTGGTAC TCATTACCTA TGTGCCGCAG ATCAGCCTGT TCCTGCCGGA GTACCTCGAC
AGCCTGCGAG GGTTTAAATA A
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| Protein sequence | MTIATLFLTL FLCMLLGMPI AIALGFSSML TILLFSNDSL ASVALKLYEA TSEHYTLLAI
PFFILSSAFL STGGVARRII DFAMDSVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG
SIVIVGMVRA GYPQKFAAGV ITTSGTLGIL IPPSIVMLVY AAATEVSAAR MFMAGLIPGL
LMGVLLMVAI YIVARIKNLP SRPFPGVKAL SLSSAKAMGG LALIFIVLGS IYGGVASPTE
AAAVACVYAY LVAVFGYRDI GPLKEVPWRK EGEAILAAIV RNLLHVGLGL IKTPTDKEIR
NVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAETI VGWGLPPWGF LIIVNLLLLA
AGNFMEPSAI LLIMAPILFP IAVQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT
GRSIGWVIHA CLPWLLLLLG FLVLITYVPQ ISLFLPEYLD SLRGFK
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