| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2209 |
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| Symbol | |
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| ID | 4604459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2670054 |
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| End bp | 2671073 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781606 |
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| Product | C4-dicarboxylate-binding periplasmic protein |
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| Protein accession | YP_928084 |
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| Protein GI | 119775344 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.160504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTAT CAAAACCAGC GACCCTGCAA TCTCTCTTTA CCCTAGGCAA AGCCAGCCTG
CTGGCAACCG TGCTGGGATT CAGCTTCGGT GCAGTCGCCG AACCGGTAGA AATCAAGTTC
TCCCACGTGG TAGCGGAAAA CACCCCCAAA GGCCAAATGG CGCTCAAGTT TAAAGAGTTG
GTGGAAAGCC GTCTTCCCGG TGAATATAAG GTGAGTGTAT TTCCCAACTC ACAGCTCTTT
GGTGACAACA ACGAACTGGC GGCACTGCTG CTGAACGATG TACAGCTGGT AGCGCCATCC
CTGTCCAAGT TCGAGCGCTA TACCAAAAAA CTGCAGGTAT TCGATCTGCC CTTCCTGTTT
GAAGACATGG ATGCGGTGGA CCGCTTCCAA CAGAGTGAAG CTGGCCAGCA ACTGCTGAAC
TCTATGAGCC GCAAAGGCCT GGTTGGTTTG GGCTATCTGC ACAATGGGAT GAAGCAGTTT
TCGGCCAACA ATGCCCTGTC ACTGCCAGGC GACGCCGCCG GTAAGAAATT CCGCATCATG
CCTTCCGATG TGATTGCAGC GCAGTTTGAG GCCGTGGGTG CCATCCCGGT GAAAAAGCCG
TTCTCCGAAG TCTTTACCCT GCTGCAGACC CGCGCCATCG ATGGCCAGGA AAACACCTGG
TCCAATATCT ATTCCAAGAA GTTTTATGAA GTACAGACTC ACATTACCGA GAGCAATCAC
GGCGTACTCG ACTATATGTT GGTCACCTCT GAAACCTTCT GGAAGAGTCT GCCCAAGGAC
AAACGCGAAA TCATCAAGCA GTCCATGGAC GAAGCCGTTG CCCTTGGGAA CAAACTGGCT
CTGGAAAAAG CCAACGAAGA TCGTCAGCTC ATCCTCGACT CCAAGCGTGT TGAGCTGGTG
ACCCTGACCC CCGAGCAGCG CCAGGCCTGG GTTAATGCCA TGCGTCCTGT CTGGTCACAG
TTTGAAGACA AGATTGGTAA AGACCTGATT GAAGCCGCCG AGTCTGCCAA CAAGCCGTAA
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| Protein sequence | MKVSKPATLQ SLFTLGKASL LATVLGFSFG AVAEPVEIKF SHVVAENTPK GQMALKFKEL
VESRLPGEYK VSVFPNSQLF GDNNELAALL LNDVQLVAPS LSKFERYTKK LQVFDLPFLF
EDMDAVDRFQ QSEAGQQLLN SMSRKGLVGL GYLHNGMKQF SANNALSLPG DAAGKKFRIM
PSDVIAAQFE AVGAIPVKKP FSEVFTLLQT RAIDGQENTW SNIYSKKFYE VQTHITESNH
GVLDYMLVTS ETFWKSLPKD KREIIKQSMD EAVALGNKLA LEKANEDRQL ILDSKRVELV
TLTPEQRQAW VNAMRPVWSQ FEDKIGKDLI EAAESANKP
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