| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2197 |
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| Symbol | |
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| ID | 4604447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2655310 |
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| End bp | 2655984 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639781582 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_928072 |
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| Protein GI | 119775332 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.111417 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGATTT TTGACTACCG CCCCCCGGCA GTCCCCTGGC TCGATATTCG CTATATCGAC
CGAGACCTCA TCATCATCAA TAAACCATCG GGCCTGCTAT CAAACCCCGG CATGGCAGCG
CACACCCACG ACAGTGCCAT TACCCGTCTG TGCAGGCTCT ATCCAGAGGC CATACTGGTC
CACCGTCTGG ATTGTGCCAC CTCGGGCATC ATGGTGTTTG CCCGCAGCAA AAAAGCCGAG
TCCAATTTAA AGACCCAGTT TCAAAATCGG GACACTGAAA AACGCTATCT AGCACAAGTG
GCAGGGATCA TCGAACAGGA TGAAGGCACG ATAGACCTGC CCCTTGGCAA AGACAGAAGC
AATCCGCCCT GGCAGAAGGT GGACATGGCG GAAGGCCGCC CGGCGGTTAC CCACTATCGG
GTACTGGCGC GGCGCGAGAA TTCAACCCTG GTAGCGCTGG AGCCTGAAAC AGGGCGCACC
CATCAGTTAC GGGTACATAT GCTGTCGCTT GGGCATCCCA TTCTGGGGGA CGACTTCTAT
GGCAGAACCC AGGAATTCGG CCAAGGCACG GTGGAAGAGG CATCACCCAG GCTCTGCCTG
CACGCAGAGC GACTCAGCTT TAAACACCCC TGGTCAAACA AGCCCATGAC CTTTGTCAGC
CGAGCGCCCT TTTAG
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| Protein sequence | MEIFDYRPPA VPWLDIRYID RDLIIINKPS GLLSNPGMAA HTHDSAITRL CRLYPEAILV
HRLDCATSGI MVFARSKKAE SNLKTQFQNR DTEKRYLAQV AGIIEQDEGT IDLPLGKDRS
NPPWQKVDMA EGRPAVTHYR VLARRENSTL VALEPETGRT HQLRVHMLSL GHPILGDDFY
GRTQEFGQGT VEEASPRLCL HAERLSFKHP WSNKPMTFVS RAPF
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