Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2191 |
Symbol | secD |
ID | 4604441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2649111 |
End bp | 2650961 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639781576 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_928066 |
Protein GI | 119775326 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.111681 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00360319 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGCTAAATA AATACCCAAT GTGGAAGAAC ATCATGGTGG TGCTGGTCAT CGCCATTGGT GGCTTCTATG CGCTGCCCAA CCTGTTCGGC GAGGATCATG CCGTACAGGT CGTGGCTACC CGTGGTGCAG ACGTTACCGC AACTACCCAA TCTGACGTGT CAGCAGCGCT GACCGCCAAG GGCATTGGCA TCAAGCGATC TGAGCTTGAA AATGGCCAGT TGCTGGTGCG TGTGGCCAAT GCTGAAGATC AGCTCACAGC CAAAGAAACC ATTGCCGAAT TGCTGGGCGA CAAATACACA GTAGCCCTTA ACCTGGCACC GGCCACTCCT GAGTGGCTGG AGTCAGTGGG CGGCAGCCCC ATGAAGCTGG GTCTCGACCT TCGCGGCGGT GTGCACTTCC TGATGGAAGT GGACATGAGC GAAGCCATCC GCAAGATGGA AGAGGCCAAG ATTGCCGATT TTCGCAGTCA GCTTCGTGAA GAGCGTATTC GCTATGCCGG TGTGCATCGC ACCGTGCGCG GTATCGAAAT CAAGTTCCGT GACGCCGAGA CTCTGTCTCA GGCAGAACGA TTCCTGAAGA GCCGTGGCAA TGACATGGTG TTTTCGGATA TCTCCAGTGG TGACAACGTG GTACTGCTGG CGGTGATGAG CGAGGCCTAC CTCAAGCAAA TCAAAGAGGA AGCCCTGCTG CAAAACATCA CGACCATCCG TAACCGTGTG AACGAGCTGG GTGTGGCTGA GCCTGTGGTG CAGCGTCAGG GTGCTGAGCG CATCATCGTG GAACTTCCCG GCGTACAGGA CACTGCCCGC GCCAAAGAAA TTCTGGGTGC CACAGCCTCC ATTGAATTCC ATATGGTGGA TGAAAAAGCC GACGTGGCTG CTGCTGCCAA TGGCCGTGTG CCAGCCGGCA GCGAGCTGTA TCAGCGCCGC GAAGGCGGCC CTGTGGTACT GAAGAAAGAA GTGATGCTGA CCGGTGACCA TATTACCGGT GCTCAGCCTT CTTTCGACGA ATACAGCCGT CCACAGGTCG CTATTCAGTT GGATGCCAAG GGTGGGGAAA TCTTCTCCAA CGTTACCAAG GACAACATCG GCAAGCCGAT GGCGACCCTG TTCATTGAAT ACAAGGACAG CGGTGAGCGT AACCCCGATG GCAGCGTGAA GATGCGTAAA ATCGAGGAAG TTATCTCGGT TGCCACCATT CAGGCACGCC TTGGCCGTAA CTTTGTTATC ACCGGTCTGA CCCACAGCGA GTCGCAGAAT CTGGCGCTCT TGCTGCGTGC CGGTGCACTG ATTGCTCCTG TATCCATCGT GGAAGAACGC ACCATTGGTC CAAGCCTGGG TGCCGAAAAC ATCGAAAACG GTCTGCAGGC GATGATCTGG GGTATGGTTG TGGTACTGGC CTTTATGCTG GTGTACTACC GTGCCTTCGG TGTGATTGCC AACCTGGCGC TGTGTGCCAA CCTCATCATG GTGGTGGGCG TGATGTCCAT GATCCCGGGT GCGGTGCTGA CCCTGCCGGG TATTGCCGGT ATGGTATTGA CTGTGGGTAT GGCTGTTGAC GGCAACGTAC TGATTTATGA GCGTATCCGT GAAGAGCTTC GTGCCGGTCG CAGCGTACAG CAGGCTATCC ACGAAGGTTA TGGCAACGCA CTGTCGACCA TCGCCGACGC CAACATCACC ACCTTCCTGA CGGCTCTGAT TTTGTTTGCT GTGGGTACAG GTGCGGTAAA AGGCTTTGCC GTGACCCTGA TGATTGGTAT TGCCACCTCC ATGTTTACTG CCATTGTGGG TACACGAGCT ATCGTGAACG CCCTCTGGGG TGGTAAGCGT GTGAAGAAAT TGTCGATTTA A
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Protein sequence | MLNKYPMWKN IMVVLVIAIG GFYALPNLFG EDHAVQVVAT RGADVTATTQ SDVSAALTAK GIGIKRSELE NGQLLVRVAN AEDQLTAKET IAELLGDKYT VALNLAPATP EWLESVGGSP MKLGLDLRGG VHFLMEVDMS EAIRKMEEAK IADFRSQLRE ERIRYAGVHR TVRGIEIKFR DAETLSQAER FLKSRGNDMV FSDISSGDNV VLLAVMSEAY LKQIKEEALL QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDEKA DVAAAANGRV PAGSELYQRR EGGPVVLKKE VMLTGDHITG AQPSFDEYSR PQVAIQLDAK GGEIFSNVTK DNIGKPMATL FIEYKDSGER NPDGSVKMRK IEEVISVATI QARLGRNFVI TGLTHSESQN LALLLRAGAL IAPVSIVEER TIGPSLGAEN IENGLQAMIW GMVVVLAFML VYYRAFGVIA NLALCANLIM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ QAIHEGYGNA LSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRA IVNALWGGKR VKKLSI
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