| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2170 |
|---|
| Symbol | |
|---|
| ID | 4604420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2625343 |
|---|
| End bp | 2626299 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639781555 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928045 |
|---|
| Protein GI | 119775305 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.366599 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGCCC CAAAATCAGA GCGTAAAGCC TCTGCACTGT CCCTGCCGCT CTTTGCCGAT
GGGGTGCATC TGGATACCCC GGAGCTTTTG GCCTGCCAGG AGCTGGCCAG GGCACTGCCG
GATGTGCGCA GTCAGGCCCG CGCCAGTATG GCTGGCCACA GGGCCAGTCA AATCAAAGGC
AGGGGGATGG AGTTTGCCGA AGTGCGCCAG TATCAGAAAG GCGATGATGT GCGCACTATC
GACTGGCGTG TTACCGCCCG CACCGGCAAG ACACACACCA AACTCTTTGT GGAAGAGCGT
GAACGCCCCG TGCTGCTTCT GGTGGATTTA AGCCACAGCC TCTATTTTGG CTCCACCCTG
ATGCTGCAGG CAGTTCAGCT GTGTCATTTG GCCACAACCC TCGGCTGGCG GGCCATAGGC
CATGGCGATC GCATCGGCGC TCTTATCGCA AGCGAACATG AGCACCTGGA ACTCAAGCCC
AGAAGCCGTA AATCCGGCAT GTTGCAGCTC ATCAGCGCGC TGACCGAAGT GCATCGTCAT
CAGTTAACCG CCTTTGATGC GATGCCCAGA GACCCAGAGC ATTTGCTGCG GGCCTGCCAG
CGTCTGGAGC GTATCGCCAA ACCCGGCTCA CTGATTTGGC TTTTGTCTGA TGGCTCTGGC
TTCAGCGAGT CCTGTGTCGG CCCACTGATG AACCTGAAAC GCCACTGCGA GCTTGGCGCA
TTTCTGGTTA CAGATCCTCT CCGTGATGGA CGCCTTCCTC TGGCCGACAA TCTGGCACTG
CCGGTACGGG AAGCCGGCAA AGAGAAACTA CTCGACCGCA GAGGCTATCA GGCATGGCTT
GAGCGGCAAA AGGAGCAGAC CAGGGCGTTT GAACATCTCA CTCTGCGGCT GGGCATCCCC
CTGAAAACCA TTGATTCGGG CCAACCTCTC TCGGCTCAAT TGGACATATT GCGTTAA
|
|---|
| Protein sequence | MRAPKSERKA SALSLPLFAD GVHLDTPELL ACQELARALP DVRSQARASM AGHRASQIKG
RGMEFAEVRQ YQKGDDVRTI DWRVTARTGK THTKLFVEER ERPVLLLVDL SHSLYFGSTL
MLQAVQLCHL ATTLGWRAIG HGDRIGALIA SEHEHLELKP RSRKSGMLQL ISALTEVHRH
QLTAFDAMPR DPEHLLRACQ RLERIAKPGS LIWLLSDGSG FSESCVGPLM NLKRHCELGA
FLVTDPLRDG RLPLADNLAL PVREAGKEKL LDRRGYQAWL ERQKEQTRAF EHLTLRLGIP
LKTIDSGQPL SAQLDILR
|
|---|
| |