| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2164 |
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| Symbol | |
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| ID | 4604414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2615312 |
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| End bp | 2619607 |
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| Gene Length | 4296 bp |
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| Protein Length | 1431 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 639781549 |
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| Product | sensory box protein |
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| Protein accession | YP_928039 |
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| Protein GI | 119775299 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.357073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.611751 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAAAG TTCTTGCTAA TCTCATAACT CTCCTATTGC TGGTAACTTG GTATGTAGAT
GCACATCAAG AGCCCGTGAG TATTCTGCCT CAACCGCCAT CTTTAATACA CTTGAACGCA
GATGCATTCA GCACTGTGCA GGGATTATCT CAGAATACTG TTACATCCGT AGTTGAAGAC
AAAAATGGAT ATATCTGGTT AGGAACACTA AACGGTCTTA ATCGGTTCGA TGGCTCTGAG
TTTAAAAAAT ACTACTCTGA GGATTTTAGC AACTTGAGTA GCGCTTTTAT TCATAGTTTG
GAAATTTTCG ATGAAAAGCT AATAATTGGT ACTGACAACA GTTTATTAGC TATGGATCCA
GACACAGAAA AGTTAAAATT AATTCTTGAA TCAAAAGAAG CAATCACTTT TTTAAAAAAA
GAAAACAATA ACTTGCTTTT AGGCTCAAGT AATTCAATTA AAGTCCTTGA TTCAGATTAC
AATATCATTT TCGAGATCAA AAGCAATAAA ATAGATTTTG TTAAACAGAT TGTGAAAAAT
GATGAGCACT ACTTAATTAG AAACCATGAT GGTACCATTT TAAAAACCAA GAATTCTGAA
AAAGATGTCG AATACATAAC TAGAGAATCA ATTTCCATTG GTTTTGATGG AGTTAAATTA
GTTATCGATA AACCTGATGG AATTTATGAA TACACAAGAA ATAATGAGTT AATAAAAATC
AGCAACACTG TTTATGATAA CGTGACATAT ATAGAATCCG GAAAAATATC ACTTAAGAAG
AATATAGTAA CAATAACAGA AAACAAAATA GAAATCTCAG GTGAAATTGA CAGTACATTT
TCTTTGCTAT CCCCACTTAT TTTTAGAGTT AAAAATGGCA TCATAATTGC CAGTATGAAT
AATGGATTTT TATATATACA AGATCACAAA AACATTGTAA AAACTGGCTC CGCACAGAAA
AATAACAATA TTTGGTTCAT AGAAAATCAT AATGAGAATT TGTTTGTAGC CGATGAGACA
GCCAACATTA AAATATACAG TAAAGAACAA CTAGAACTTG TTGGCGAAGT TGACACTAAA
GCAATAGGTT TTAAGGCAAT ATCTATTATA AACGATGATG AATTGATTTA CTGCTCTACA
TATGGAATAT TCAAACATAA CCTATCAAAT AAAACTCAAA TTAAAATTTC AGACCGTATA
GCTTACGCGT TGGCATACAA CGAAAACTCC AATAAAATTT ATATTGGAAC CAACGATCTA
AAGCTGGTAT CAATAGATTT AAACTCATTT GAAGAAATTA TCTTAAACTC TAGCAATCTA
CCTATTTTTC AGCTTAAAAT ATCACCAAAA GGTGGTGACT TATACATTTC ACATCAAGGC
GGACTATCCG TTATTAGGAA TAATGAAGCG GCGATTAAAG ATATCATATC AGAGCATATT
GTTTATGGTA TTGAATTTTT TGATACATAT ATAGCCGTTG CAACTAATAG CGGAATATTA
AAGCACGAAA TCAGTTCTAA TAAAACTGAA ACATTAGTTA ATATGGATAA ACCCGTCTAT
AGTTTAGGAG CATATGATGG TTGGATCTTC GGTTCATCCA TTAATAGCAT AGTCGTGGCG
GCACAAGAGA GAGTCTATAC TTTATATTCG AGTAATGGTG CTCAAGCTGA GTATAACAAT
CAAAGCTTTG GAACATTTGC AAATGGCGTT ATCTTAGGTG GAATTCAGGG TTTATCCATT
TTCAATAAAA AAGATTTTCA AAATTTTATG ATGAAGGTCC CTGAAAGGCT AAACACTAAC
CTTACAGGGC TTTATCTTTT TAATAAAGAG GTTAAAAATG ACTCTGAAAT AATGAAAAAA
TCTATCAACT CTTCTGAGTC AATAACCTTG AAGTATTCTG ACTACCCTTT TGCCATTCAG
TTTTCATCGC CACTTTATAG CAATAGTAAC GTTACTCATT ATTACAGGCT TAAAGGACTA
TCTGATGAGT GGATTGCGGC GCAAAAAACA AAAATTGCCA CCTACACTAA CTTATCCGCT
GGTAAATATA ATTTTGAGGT TTATGCAAAG GACAACTTAA GCCAATTATC AGGCCCTATT
AAATCAGTAT CAGTGATAGT AACGCCGCCG TGGTGGATGT CTCTCGAAGC CAAGCTAGCC
TACGCCTTAA TTTTCTTATT AATTACATCA GGCATAATTA AAGCGGCATT GCGTCGCCGT
GAAGTCCAGC GCCAAATCGC CATCAGTGAA GAGCGCCTCA AACTGTCCCT GTGGGGTAGT
GGCGATGAAA TGTGGGACTG GGACATAGAA ACCGGAAAAA TTTATCGCTC CAATATCTGG
GGTTCGCTTG AGTTTCCCAA AGATGGCCAT CGCTCAGGGA AAGATGATGA GGAGAGTAAT
ATTCATCCAC AGGATCAGGA GCGGGTGCGC GAGGCATTGA ATCGCCACTT TTATGGTGAA
ACCGATCACT TTGAAGCTGC ATATCGTGTC AAAGGCAAGG ATGGTCATTG GGTCTGGATT
TTGGACAGAG CCAAAATTGT TGAGAGGGAC GACAGTGAAA ACGCCCTGCG GATGACAGGG
ACAATCAAGA ACATCAATAA TTTCAAACAG GCAGAAGAAC AACTGCGACT TTTCGAACGT
GCCATCGAAA ATATCTCTGA AGGCATGTTT ATACTCGACC ATGAGTTCAG ATTTGTAGAA
GTCAACGAGG CGTGCTGCGA CATCTGTCTG ATGGACAAAG ACAGTTTTAT TGGCACCCAA
CTTCAGTTCA GTTGTTACCC GGATGCCTAT TCCGAGCAGG TACGGATCAT TCTTCGCCAA
CAGGGGCGCT GGAGCGCTGA GGTAGAATCC CGCCGCGGAG ACAACTCCAC ATTCCTGATG
GAGCTCACTG TCGATGCTAT TTACGACGAA CAGGGCACTC TGAGCCACTT CGTTGGCGTA
TTCTCCGATA TATCAAGACG TAAACAGCAG GAAGAAGAAC TCAGAAAACT GACCAACAAC
GATTTGCTGA CCGGTCTACC AAATCGTTCC AACCTTCAGG TCTCTCTGAA CAACCTGGTG
AAAAAAGATA CTCACCATAC CCTGATGGTA CTCGATTTAG ATAACTTCAA AAAAATCAAT
GACTCACTTG GACATCAGGT TGGTGATGAG TTGTTGCAGC TTGTTTCCAG ACGTATGTCA
GCTGCATTGC CGGGCCACAC CAGTCTCTAT CGCCTGGGCG GCGATGAATT TGCGGTGCTT
CTCGACAAAG ACCCGGATAT CGGCAGCGCC GCCGCAATTG CCAAAGGATT GGTGGATGCC
TTTGTCGCAC CGTTTGAACT TGCCGGGGAA AAACTGGTGG TAGGCGTCAG TATCGGTATT
GTGCTCTATC CTGAAGATGA GCAAAACGAG CAGGCGCTGC TCAGAAAAGC CGATATAGCC
ATGTACCACG CCAAGTCAGC TGGTGGTAAC AGATACCAAT TTTATTCCGA ATCACTAAAT
CGAAACGCAC TGCGTCAGCT GGAAGTCGAA AATCTTATCC GTGATGGCCT CAGGGACGAC
CTCTTCGAAG TCTATTATCA GCCTAAAGTC GACTTAAGAA ACTCCCGTAT GGCCGGCATG
GAAGCGCTGG TCCGACTGAA TCATCCCACT CAGGGTTTAA TCCCGCCGTC AGAGTTTATT
CCGCTGGCAG AAGAGACTGG GCTCATTGTT GAAATTGGCG ATCTGGTGAT GCGTAAAGCC
TGTTTTGCTG CCCAGCGTTG GCGTGAGCAG GGCTTGTTTG ATGGGCGTGT TGCCGTCAAT
TTGTCGTCGC GTCAGTTTGC ATTAACTGAT TTGCAACAAC GTATTGAGTC AATTTTACGT
CTGACCAAAC TGCCTGCCGC CAACCTCGAA TTGGAAATTA CTGAAGGCAC CGTAATTAAG
CAGCCTGAAA AGGCCATCAA GGTGATGCAG CAACTGGCAA AGATGGGAGT TAGCCTGGCG
CTGGATGATT TCGGTACCGG TTATTCGTCA TTGTCCTATC TCAAGCGCTT TCCGATCCAT
ACTCTGAAAA TCGACAAGGC CTTTGTTGAT GACATAGATA AATCAGACAG GGATCTTAAG
ATGGTAGACT CCATCATCAC CATAGCCCAT AACATGGGAC TGACAGTGGT AGGTGAAGGC
GTAGAGGTGC CCTCGCAGCT GAATATTCTA AGAGCACTGA AATGCGAAGA GGTTCAGGGG
TACATCTACA GTAAAGCGGT CCCTGAAGCT GAGTTTACCA CGCTGCTGAA GCAGGATATG
GGTGAATTCC TGAACCAAAA ATACAATCAG CGATAG
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| Protein sequence | MHKVLANLIT LLLLVTWYVD AHQEPVSILP QPPSLIHLNA DAFSTVQGLS QNTVTSVVED
KNGYIWLGTL NGLNRFDGSE FKKYYSEDFS NLSSAFIHSL EIFDEKLIIG TDNSLLAMDP
DTEKLKLILE SKEAITFLKK ENNNLLLGSS NSIKVLDSDY NIIFEIKSNK IDFVKQIVKN
DEHYLIRNHD GTILKTKNSE KDVEYITRES ISIGFDGVKL VIDKPDGIYE YTRNNELIKI
SNTVYDNVTY IESGKISLKK NIVTITENKI EISGEIDSTF SLLSPLIFRV KNGIIIASMN
NGFLYIQDHK NIVKTGSAQK NNNIWFIENH NENLFVADET ANIKIYSKEQ LELVGEVDTK
AIGFKAISII NDDELIYCST YGIFKHNLSN KTQIKISDRI AYALAYNENS NKIYIGTNDL
KLVSIDLNSF EEIILNSSNL PIFQLKISPK GGDLYISHQG GLSVIRNNEA AIKDIISEHI
VYGIEFFDTY IAVATNSGIL KHEISSNKTE TLVNMDKPVY SLGAYDGWIF GSSINSIVVA
AQERVYTLYS SNGAQAEYNN QSFGTFANGV ILGGIQGLSI FNKKDFQNFM MKVPERLNTN
LTGLYLFNKE VKNDSEIMKK SINSSESITL KYSDYPFAIQ FSSPLYSNSN VTHYYRLKGL
SDEWIAAQKT KIATYTNLSA GKYNFEVYAK DNLSQLSGPI KSVSVIVTPP WWMSLEAKLA
YALIFLLITS GIIKAALRRR EVQRQIAISE ERLKLSLWGS GDEMWDWDIE TGKIYRSNIW
GSLEFPKDGH RSGKDDEESN IHPQDQERVR EALNRHFYGE TDHFEAAYRV KGKDGHWVWI
LDRAKIVERD DSENALRMTG TIKNINNFKQ AEEQLRLFER AIENISEGMF ILDHEFRFVE
VNEACCDICL MDKDSFIGTQ LQFSCYPDAY SEQVRIILRQ QGRWSAEVES RRGDNSTFLM
ELTVDAIYDE QGTLSHFVGV FSDISRRKQQ EEELRKLTNN DLLTGLPNRS NLQVSLNNLV
KKDTHHTLMV LDLDNFKKIN DSLGHQVGDE LLQLVSRRMS AALPGHTSLY RLGGDEFAVL
LDKDPDIGSA AAIAKGLVDA FVAPFELAGE KLVVGVSIGI VLYPEDEQNE QALLRKADIA
MYHAKSAGGN RYQFYSESLN RNALRQLEVE NLIRDGLRDD LFEVYYQPKV DLRNSRMAGM
EALVRLNHPT QGLIPPSEFI PLAEETGLIV EIGDLVMRKA CFAAQRWREQ GLFDGRVAVN
LSSRQFALTD LQQRIESILR LTKLPAANLE LEITEGTVIK QPEKAIKVMQ QLAKMGVSLA
LDDFGTGYSS LSYLKRFPIH TLKIDKAFVD DIDKSDRDLK MVDSIITIAH NMGLTVVGEG
VEVPSQLNIL RALKCEEVQG YIYSKAVPEA EFTTLLKQDM GEFLNQKYNQ R
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