| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2163 |
|---|
| Symbol | |
|---|
| ID | 4604413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2612191 |
|---|
| End bp | 2614980 |
|---|
| Gene Length | 2790 bp |
|---|
| Protein Length | 929 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639781548 |
|---|
| Product | M16 family peptidase |
|---|
| Protein accession | YP_928038 |
|---|
| Protein GI | 119775298 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1025] Secreted/periplasmic Zn-dependent peptidases, insulinase-like |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.744451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.763441 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCAGTCA ACCAGTTCCC TCTCACCAGT CCCAACGATC ACCGTCAATA CCAGTATCTG
GTTCTCGACA ATGCATTGAG GGTACTGCTG GTTTCGGATC CACAGGCAAG TCAGGCGGCA
GCCTCTATGG CCGTGAATGT CGGTCACTTT GACGATCCCG CTCAGCGCCT GGGTATGGCG
CATTTTTTGG AGCACATGCT TTTTTTAGGC ACCGAAAAAT ACCCTGACCC AGCCGAATAC
CATGCCTTTA TCAATCAGCA TGGCGGCAGC AACAATGCCT GGACGGGCAC TGAGCACACC
AACTTTTTCT TTACCATCAA TGCAGACGTT TTTGATGAGT CGCTGGACAG GTTCAGCCAG
TTTTTCATTG CCCCGACCTT TAACCGTGAG TTGGTTGACC GAGAGCGGCA AGCCATTGAG
TCTGAATACA GCCTTAAGCT TAAAGATGAT GTTCGTCGTA TGTATCAGGT GCACAAGGAA
ACAGTCAATC CGGCCCATCC CTTTTCCAAA TTTTCGGTCG GAAATCTTGA TACTCTTGGC
GGGGATCAGG ATGAACTGCG CGAAGAGCTG CTGCAGTTTT ATAAGACTCA TTACAGTGCC
AACCTGATGA CCCTGTGCCT GGTTTCACCC GAGCCGCTGA CAAGTCTGGA TGCGATGGCA
CGACAATACT TCGGGGCTAT CAAAAATACC GGACTGAAGA AGCACTACCC CGATGTCCCG
CTTTATACCG AAACCGAACT TGGTACCTGG GTACAGGCGA TTCCCCTCAA GGAGCAAAAA
CGCCTGACGC TCACCTTCCC CTTACCCGGC ATTGATAGGT TTTACCGCCA CAAACCCCTG
ACCTTCTTAA GCCATCTTTT GGGTAACGAA AGCGAGGGCA GCCTGCAGGC ACTGTTAAAA
GAAAAAGGCT GGGTAAATCA GCTCTCTGCA GGTGGCGGTG TGAATGGTTA TAACTTCAAG
GATTACAATA TCAGCTTCCA GCTCACCGAC CGGGGACTGG GCCAACTGGA CGATATTATT
CGTCTGACCT TTGAATACCT TGAGATGATC AGATCTCAAG GCCTGGAAGA ATGGCGTTAT
CGCGAACGAG CAAGCCTGCT TAAACTGGCA TTTCGCTATC AGGAACAAAT CAAGGCCATG
GATTTGGCGA GCCACTTATC CATCAACATG CATCACTATG GCGTGGAAGA CCTGATTTTT
GGTGACTACC GCATGGATGG GCTGGACATT GCAGAGTGCG AATCGCTTCT GTCACAGATG
TCGCTGGATA ACCTTCGCGT CCAATTGGTC TGCCAGGAGG TTGATACCAA TCGGCAGGCA
AACTGGTACC ACACACCTTA TGCATCGAGG CCTCTTGAGG AACAAGAAAT CAACCGCTGG
CGTCCCAAAG GGGAGACCAG CGGGCTAAGA CTGCCGGAGC CAAACCCGTT TATCGTTGAA
GATGCACAGG CCCGGCCAGA TAAGAGTCAG TCACCGGTTC CAACTGTGGT CGCCGAGGCA
ACAGGTTACA GACTGTGGCA CAAAAAAGAC GACGAATTTA ATGTCCCCAA GGGGCATCTG
TTTTTATCAC TCGACTCAGA TCAGGCCAGT CAGGATCCGC GTAACGCCGC CCTAACCCGC
CTCTATGTGG AAATGCTGCT GGACTACCTC ACCGAGTACA CTTACCCCGC AGAAGTCGCA
GGCCTAAACT ACAACATCTA TCCCCATCAG GGTGGATTAA CCTTGCATCT GAGCGGTTTT
ACCGGCAACC AGGAAACCTT GCTTGCCCTG CTTATCAGCA AAGCCAGAGA ACGCAATTTC
ACTCAGGAGC GCTTTAATGT TATCAAACGG CAGCTCCTTC GCAGTTGGTA CAACGCCGCT
CAGGCAAAGC CTATTTCACA GCTATTCACC AGCTTAACGG TTACCTTGCA GCGCCGCTCC
TATGAACCTC TGCGTATGGC AGAAATGCTG GAAGAATGCA CTCTGGAAGA TTTGCATGAG
CACGTTCGGG CGTTCTACGA AAAAATCTAC CTCGAAGGCC TGGTGTACGG TGACTGGCTC
ACTCAGGAAG CCCAAACTCT CGGACACCGC CTGAGTCACA TTCTGTCGTT GGTTTCCACA
CCCAGTGGCG AGTCAGCCCG CGAGCTGGTT AACCTTACAG GTAAAGGGAC CATGCTGCGC
GAGCTCACTA TCAGCCATCA GGACAGTGCT ATTATCGTTT ACTATCAGTC GCCCAGCGCA
ACACCTGAAA AAATGGCTCT GTTTGCACTG ATGAATCACA CCATGTCGTC CACTTTCTTC
CACGAGCTCA GAACAGAGCA ACAACTTGGA TATATGGTCG GCACCGGCTA TTTGCCACTG
AACCGGCACC CCGGAATGAT TTTTTACATC CAATCACCTT CGGCCGGACC ATTACAGTTG
CTTGAAGCCA TTGATGAGTT CATTGCTGAC TTCAGCTATG CGGTCATGCA AATCACCAAA
GAGCAGTGGG AGTCCACCAA GACGGGCCTC ATCAACCAGG TGATGGAACA TGACGCCAAT
TTAAAGACCC GTGGACAACG CTACTGGGCG AGCATAGGTA ATAAGGACTA TGGGTTTAAT
CAACGGGAAT TGGTGGTGGC CGAAATCGAG AAACTGACAC GTGCCGACTT GATAAAATTC
ATGATGCAGC GGATGCGCAC CAAGCACTGC GACCGACTGG TACTCTTCAG CACCGGAGAG
CAGCACAGGC ACCTGCAGGC GCTAAGCTCG GACAAGATGA TCACAGACCT GCGGACCTTT
AAGCTGCATT CAGATAAATT CCATCTGTAA
|
|---|
| Protein sequence | MPVNQFPLTS PNDHRQYQYL VLDNALRVLL VSDPQASQAA ASMAVNVGHF DDPAQRLGMA
HFLEHMLFLG TEKYPDPAEY HAFINQHGGS NNAWTGTEHT NFFFTINADV FDESLDRFSQ
FFIAPTFNRE LVDRERQAIE SEYSLKLKDD VRRMYQVHKE TVNPAHPFSK FSVGNLDTLG
GDQDELREEL LQFYKTHYSA NLMTLCLVSP EPLTSLDAMA RQYFGAIKNT GLKKHYPDVP
LYTETELGTW VQAIPLKEQK RLTLTFPLPG IDRFYRHKPL TFLSHLLGNE SEGSLQALLK
EKGWVNQLSA GGGVNGYNFK DYNISFQLTD RGLGQLDDII RLTFEYLEMI RSQGLEEWRY
RERASLLKLA FRYQEQIKAM DLASHLSINM HHYGVEDLIF GDYRMDGLDI AECESLLSQM
SLDNLRVQLV CQEVDTNRQA NWYHTPYASR PLEEQEINRW RPKGETSGLR LPEPNPFIVE
DAQARPDKSQ SPVPTVVAEA TGYRLWHKKD DEFNVPKGHL FLSLDSDQAS QDPRNAALTR
LYVEMLLDYL TEYTYPAEVA GLNYNIYPHQ GGLTLHLSGF TGNQETLLAL LISKARERNF
TQERFNVIKR QLLRSWYNAA QAKPISQLFT SLTVTLQRRS YEPLRMAEML EECTLEDLHE
HVRAFYEKIY LEGLVYGDWL TQEAQTLGHR LSHILSLVST PSGESARELV NLTGKGTMLR
ELTISHQDSA IIVYYQSPSA TPEKMALFAL MNHTMSSTFF HELRTEQQLG YMVGTGYLPL
NRHPGMIFYI QSPSAGPLQL LEAIDEFIAD FSYAVMQITK EQWESTKTGL INQVMEHDAN
LKTRGQRYWA SIGNKDYGFN QRELVVAEIE KLTRADLIKF MMQRMRTKHC DRLVLFSTGE
QHRHLQALSS DKMITDLRTF KLHSDKFHL
|
|---|
| |