| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2150 |
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| Symbol | truA |
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| ID | 4604400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2596714 |
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| End bp | 2597499 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781535 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_928025 |
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| Protein GI | 119775285 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00702762 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCATTG CTCTTGGGAT TGAATACGAC GGCAGCAAGT TTTATGGCTG GCAGCGTCAG
GCCGAAGTGA ACTCGGTACA GGCAGAGCTC GAACGCGCGC TCTCCATCGT TGCTAACGAG
CCCATTGAGG TCCAGTGTGC CGGTCGTACC GATGCCGGGG TACACGCCAC CGGCCAGGTG
GTGCATTTCG ATACCAATGC CGTAAGAAAA GAAGGCGCCT GGACACTGGG TGTGAACGTT
CACCTGCCCG ATGACATCGC CGTTCGCTGG GCCATGCCGG TGAACGATGA TTTCCATGCC
CGTTTTTCTG CCACCGCCCG CCGTTATCGG TACGTTATCT TCAATCATAA TTTCCGTCCC
GGCATTTTGC GCAAGGGCGT GAGCCATTAT CACGGCGATA TCGATGTCGA GCGCATGCAT
GATGCCGCAC AGGCGCTAAT AGGTGAGCGG GACTTCACCA GTTTTCGCGC CATTGGCTGC
CAGTCCAATA CGCCGTTTCG CAATGTACAT AAGGTCAGCG TAAGCCGCCA TGGCATGTAT
ATCGTGGTCG ATATCCAGGC CAACGCCTTT TTGCACCATA TGGTGCGCAA TATCGTAGGT
TCCCTTCTGG AAATCGGCCT TGGCAACCAA CCACTTGACT GGATGGCAAC CTTGCTTGAG
GCCAAAGACA GAAGCCAGGC TGCCGCCACC GCCAAGCCTC ACGGACTTTA TTTGGTCGAT
GTGACTTACC CGGAGAGTTT TGGTTTGCCC AAGCTGTCCC TCGGCCCGCT TTTTATGCCA
GACTGA
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| Protein sequence | MRIALGIEYD GSKFYGWQRQ AEVNSVQAEL ERALSIVANE PIEVQCAGRT DAGVHATGQV
VHFDTNAVRK EGAWTLGVNV HLPDDIAVRW AMPVNDDFHA RFSATARRYR YVIFNHNFRP
GILRKGVSHY HGDIDVERMH DAAQALIGER DFTSFRAIGC QSNTPFRNVH KVSVSRHGMY
IVVDIQANAF LHHMVRNIVG SLLEIGLGNQ PLDWMATLLE AKDRSQAAAT AKPHGLYLVD
VTYPESFGLP KLSLGPLFMP D
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