| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2125 |
|---|
| Symbol | |
|---|
| ID | 4604375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2570694 |
|---|
| End bp | 2571290 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639781510 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_928000 |
|---|
| Protein GI | 119775260 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
|---|
| TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.676693 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGA TTAGTCACTT ACAGCTGAAA CAATTGATAG AGGCTTGCCT GTTTGTTCAG
CAAAAGCCGA TGACCATCAA AGCATTGCGA GAAGGCGTGC TGGCGCCTTT TGCCGTATCA
CGGGAAAGGA TCAGTACCGT TGTTGCCGAG CTGATGGTCG ATTATCAGGA ACGAGGGGTC
AATCTGGTGA AAGTGGCGGG CGGATACCGC TTCCAGACCC AGGAAACCCT GAACCCTTAC
CTGCAGACCC TGTGGCAGGA AAAGGCGCCC AAGTATTCGC GGGCAACCCT GGAAACCCTG
GCGGTGATTG CATATCGCCA ACCTGTGACC CGGGGTGATA TTGAGCAGGT AAGGGGTGTG
GCACTTGGAA GCCACATCCT GAAAACCTTA TCTGATCGTC GATGGATCAG AGTGGTGGGG
CATAAAGAGG TTCCGGGTCG TCCGGCACTT TACGCCACCA CTTCAGAATT TTTGGCCTAT
TTTGGCTTGG ATAATCTGGC GTCATTACCG GCGCTGGCGG ATCTGGAGTC ATTGGATGCG
TTATTTGGCA AACAAACTGA ATTACCAAAT GCGCAGGAAG AATTAACTCA TGAGTGA
|
|---|
| Protein sequence | MAQISHLQLK QLIEACLFVQ QKPMTIKALR EGVLAPFAVS RERISTVVAE LMVDYQERGV
NLVKVAGGYR FQTQETLNPY LQTLWQEKAP KYSRATLETL AVIAYRQPVT RGDIEQVRGV
ALGSHILKTL SDRRWIRVVG HKEVPGRPAL YATTSEFLAY FGLDNLASLP ALADLESLDA
LFGKQTELPN AQEELTHE
|
|---|
| |