| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2096 |
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| Symbol | upp |
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| ID | 4604346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2540524 |
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| End bp | 2541150 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781481 |
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| Product | uracil phosphoribosyltransferase |
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| Protein accession | YP_927971 |
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| Protein GI | 119775231 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0035] Uracil phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.382375 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGTCG TCGAAGTAAA ACATCCCCTG GTTCGCCATA AAATTGGCCT GATGAGAGAA
GCGGATATCA GCACCAAGCG TTTCCGTGAA CTGGCTGCCG AAGTGGGCAG TTTGCTCACC
TACGAAGCCA CTGCCGATTT AGAAACCGAA ACCGTGACCA TTGAAGGCTG GAATGGTCCG
GTGCAGGTTG AGCAAATCAA GGGCAAAAAA GTGACAGTAG TGCCTATCCT TCGCGCCGGT
CTTGGCATGA TGGACGGCGT CCTGGAGCAT ATCCCAAGCG CCCGTATTTC TGTGGTAGGT
ATCTACCGCG ACGAAGAAAC CCTTGAGCCA GTACCGTATT TCGAAAAGCT GTGCAGCCAG
GTGGATGAGC GCATTGCGCT GGTGGTTGAC CCCATGCTGG CCACAGGCGG CTCCATGATT
TCTACCATCG ACCTGCTCAA GCAGCGCGGA TGTAAGCAAA TCAAGGCACT GGTACTGGTT
GCTGCCCCCG AAGGCTTGGC TGCACTGGAA AAAGCCCACC CGGATATCGA GCTCTACACC
GCGTCTATCG ACCGCTGCCT GAATGAAAAT GGCTACATTT TACCGGGCCT CGGTGATGCC
GGTGACAAGA TTTTTGGCAC CAAATAA
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| Protein sequence | MKVVEVKHPL VRHKIGLMRE ADISTKRFRE LAAEVGSLLT YEATADLETE TVTIEGWNGP
VQVEQIKGKK VTVVPILRAG LGMMDGVLEH IPSARISVVG IYRDEETLEP VPYFEKLCSQ
VDERIALVVD PMLATGGSMI STIDLLKQRG CKQIKALVLV AAPEGLAALE KAHPDIELYT
ASIDRCLNEN GYILPGLGDA GDKIFGTK
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