Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2093 |
Symbol | |
ID | 4604343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2537303 |
End bp | 2538079 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639781478 |
Product | ribonuclease T |
Protein accession | YP_927968 |
Protein GI | 119775228 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | [TIGR01298] ribonuclease T |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000154544 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAGCCA AGGCGCCTTT TAGCATAATA GCGCCCTTTG CAACGACCAG AGAATTCAGG ATGTCTGACG CCTTCAACCC CAACAAGCTC AAGTACCGGT TCCGTGGCTA TTATCCTGTG GTAATCGATG TAGAAACCGC CGGCTTCAAT GCCCAGACCG ATGCCTTGCT GGAAATAGCC GTCACCCTGC TGACTATGGA CGATAACGGC ATGCTGGCGC TGGATAAAAC ACTGCATTTT CATATTGAGC CCTTTGAAGG TGCCAATCTC GAACCTGCTG CGCTGGCCTT TAACGGCATA GACCCAAGTA ATCCCCTGCG TGGGGCCGTC AGTGAAAAAG AGGCGATGCT GGAAATATTC AAGGCGGTGC GCAAAGGCAT GAAAGCCGCT GATTGCCACA GGGCCGTGAT AGTGGCCCAC AATGCCGCCT TCGACCATGG CTTTGTGACC AAGGCGATTG ACCGCAGTGG CGTAAAACGC TCGCCATTCC ATCCCTTTGC CACTTTTGAT ACTGCCTGTT TGTCTGGTCT GGCCCTGGGG CATACAGTGC TGGCGCAGGC CTGTAAAATC GCCGGTATTC CCTTCGACAA TAAAGAAGCC CACAGCGCCC TCTACGATAC CGAGCGTACC GCCGAGCTCT TCTGTTATAT CGTCAACCGC TGGAAGTCCC TCGGTGGCTG GCCATTACTG GGCGCCGAGG CTCTGGATGA CGCCGAGAAT ACGGCTGCGG ATAAGGAGAT CGATGATGAG GATACCCTGG GTAGCACTGG CGAATAA
|
Protein sequence | MTAKAPFSII APFATTREFR MSDAFNPNKL KYRFRGYYPV VIDVETAGFN AQTDALLEIA VTLLTMDDNG MLALDKTLHF HIEPFEGANL EPAALAFNGI DPSNPLRGAV SEKEAMLEIF KAVRKGMKAA DCHRAVIVAH NAAFDHGFVT KAIDRSGVKR SPFHPFATFD TACLSGLALG HTVLAQACKI AGIPFDNKEA HSALYDTERT AELFCYIVNR WKSLGGWPLL GAEALDDAEN TAADKEIDDE DTLGSTGE
|
| |