| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2088 |
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| Symbol | |
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| ID | 4604338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2531972 |
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| End bp | 2532409 |
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| Gene Length | 438 bp |
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| Protein Length | 145 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781473 |
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| Product | tolR protein |
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| Protein accession | YP_927963 |
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| Protein GI | 119775223 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | [TIGR02801] TolR protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00030908 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCACGGTT ATCAGCGCAA GCGCCGCCGC CCCGTGGCTG AAATCAACGT CGTCCCTTAT
ATCGACGTGA TGCTGGTGCT GCTTATCATC TTTATGGCGA CTGCGCCCAT TGTGACTCAG
GGCGTCAAGG TCGACTTGCC CACAGGTGAG GCTGAAGCCC TGTCCACAGA CAGTAAGCCA
CCGGTAGTGG CCTCCATTGA TGCCAATGGG GATTACTATC TGGATATTGG CAGTGGCAGC
AGCGCCAAAG ACGTGCTGAC CCTCGATGAT GTTGCAACTC AGGTTGCGGC CATGATAATG
CTGGAGCCTG AGCGCCCCGT GGTGGTGAAA GCCGATCGCA CTATTCCCTA TGAGGACGTT
ATTCAGTTGA TGATCACGCT GCAAAAAGCC GGAGTGCCCT CGGTGGGGCT GATGACGGAC
TCGCCACAGG AGAAGTAA
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| Protein sequence | MHGYQRKRRR PVAEINVVPY IDVMLVLLII FMATAPIVTQ GVKVDLPTGE AEALSTDSKP
PVVASIDANG DYYLDIGSGS SAKDVLTLDD VATQVAAMIM LEPERPVVVK ADRTIPYEDV
IQLMITLQKA GVPSVGLMTD SPQEK
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