| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2086 |
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| Symbol | tolB |
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| ID | 4604336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2529649 |
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| End bp | 2530974 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781471 |
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| Product | translocation protein TolB |
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| Protein accession | YP_927961 |
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| Protein GI | 119775221 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000540509 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGATCA TCGGAAAGTG GGCGCTGCTG ATAATTGCCG CTCTGTCTTT GCCCGTGAAG
GCCGCTTTGG ACATCGTTAT CACCGAAGGT GTTGATGCTG CCCGACCCAT TGCAGTGGTG
CCCTTTGTTT GGCAGGGAAC TGGCCCGGTT CCATCACAGA TTTCAGATGT TGTGGCATCG
GATCTCACCC GCAGTGGTAC TTTTAAACCT TTGGATGCGT TGGGATTGCC GCAAAGCGGT
ATTTCTACCC TCGCTGAATT TGCACCGCAA AAATGGACCG GTATTAACGC CGAAGCGGCC
GTGGTTGGCG CCATCAAGCC TTATGGCCCG GATCAGTATC TGGTGACCTT TGATTTGATT
GATTTGCTGA AAGCGCAATT GGCCGGTCAG GCGCCGCTGA ACAAGCAGGA CCTGCTGTTG
GATAGCCGCC AGACGGTGAT TACCGCGGCC CAGTTCCGCC AGTATGGTCA TCGCATCAGC
GATGTGGTCT ACGAAAAACT CACCGGTATT CGCGGCGCTT TTTTGACCCG TATCGCTTAC
GTGGTGGTAA ATCATGCCGA GAAAGCCCCA TACCGTTTGA TGATTGCCGA TTATGACGGC
TACAACGAGC ACATGTTGCT GCGCTCCCCT GAGCCGCTGA TGTCGCCTGC CTGGTCGCCG
GATGGTCGCC GCCTGGCTTA TGTCAGCTTT GAAAACCGCA AGGCCGAAAT CTTTGTACAG
GACATCTTTA CTCAGGCCCG TACCAAGGTC TCCAGCTTTC CCGGAATTAA TGGTGCGCCA
AGTTTTTCGC CCGATGGCAA AACCTTGGCG GTGACGCTGT CTAAAGACGG TCAGAGCGAA
ATCTATACCA TCGACATCGC CACCAAGACC ACCCGCCGGA TAACCAACCA CTATGCTATC
GACACAGAGC CAAGCTGGTT CCCCGATGGC AAGTCGCTGC TTATCACCTC TGAGCGTGGC
GGCAGACCTC AGCTGTATAA GGTGGAGCTG GACTCCGGCA AGTTGACCCG TCTGACCTTT
GATGGTGAGT GGAACCTCGG TGGCTCCATT ACCCCGGACG GCCGCACCCT GATTTTTGTA
AACCGTACCA ACGGCAAGTT CAATATCGCT CGCATGGATC TGGAAACCCG GTTTATGCAG
GTGCTGACCA CGACCCGTTT GGACGAATCT CCCAGCGTGG CGCCCAATGG CACCATGGTC
ATTTATGGCA CCACGCATCA GGGCCGGCAG GTGCTCGCTG CCGTGTCTAC GGATGGACGC
TTTAAGGCAA GATTGCCCGC GGGGCAGGGG GAGGTGAAAT CACCTTCCTG GTCACCGTTC
CTGTAA
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| Protein sequence | MKIIGKWALL IIAALSLPVK AALDIVITEG VDAARPIAVV PFVWQGTGPV PSQISDVVAS
DLTRSGTFKP LDALGLPQSG ISTLAEFAPQ KWTGINAEAA VVGAIKPYGP DQYLVTFDLI
DLLKAQLAGQ APLNKQDLLL DSRQTVITAA QFRQYGHRIS DVVYEKLTGI RGAFLTRIAY
VVVNHAEKAP YRLMIADYDG YNEHMLLRSP EPLMSPAWSP DGRRLAYVSF ENRKAEIFVQ
DIFTQARTKV SSFPGINGAP SFSPDGKTLA VTLSKDGQSE IYTIDIATKT TRRITNHYAI
DTEPSWFPDG KSLLITSERG GRPQLYKVEL DSGKLTRLTF DGEWNLGGSI TPDGRTLIFV
NRTNGKFNIA RMDLETRFMQ VLTTTRLDES PSVAPNGTMV IYGTTHQGRQ VLAAVSTDGR
FKARLPAGQG EVKSPSWSPF L
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