| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2078 |
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| Symbol | |
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| ID | 4604328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2516754 |
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| End bp | 2520179 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781455 |
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| Product | sensor histidine kinase/response regulator |
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| Protein accession | YP_927953 |
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| Protein GI | 119775213 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.45474 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGA CCCTCTTTGT TGCCGTCATT GCGGTTTTTT ACGTCTTTCT GTTATTCCTG
TTGGCATGGG GCGCCGAGCG CTGGTTCAGT GGCGTGACCA AGAAGCTGCA GATTTGGATT
TATGGCCTGA GTCTCGCGGT ATATTGCTCA TCCTGGAGCT TCCTGGGTAC TGTTGGTCAG
TCGGCGGGCG ATCTCTGGTC GTTTTTGCCT ATTTTTCTCG GGCCCATACT CATTTTCACT
TTTGGCTTTG GCATGCTGCG CAAAATGGTG GTGGTATCCA AGGCGCAGAA CATCACCTCG
GTGGCCGACT TTATCGCCGC CCGCTATGGC AAGTCTCAGG GGCTGGCAGC CCTGGTTACC
CTAATCGCAC TCTTTGGCAT CATGCCGTAT ATAGCGTTGC AGCTTAAGGC GATGGTGGCC
TCACTGAACC TGTTTCAGGA GGCAGGGCAG CCGCTGGACG GCATGAGTGT GGCGCTGATA
ATTTCCGTGG TGCTGGCGGT CTTTGCCATC CTGTTTGGTA CCAGAAAGCT TGACGCCACT
GAACACAATC CCGGGATGAT GCTCGCCATC GCCTTTGAGT CTTTGGTGAA GCTGGCGGCC
TTTTTGTTGG TGGGCCTGGT TATCAGCTTT GGGGTGTTTG ATGGTTTTTC CGACATCTGG
CAGCAGGCTG ATGAGGCCGG AATCATCCAA CATCCCAAGC TCAGGCTCGA AGCCATACTA
CCGGATTTGG TGGTCGGCAT TGCCGCATTT TTGTGTATGC CGCGTCAGTT TCACGTGATG
GTGGTGGAAT GTGCCGGCGA AGGTGTACTG CGCCGCGGCC GCTGGATATT CCCTGTTTAT
ATCGCCCTTT TTGGGCTGTT TGTGGCACCG CTGGCTCTGG CGGGCAAACT GCTTCTTGGT
GATAGTGTGC CCGCCGACAG TTATGTGATT AACCTGCCGC TGGCGCTCAA TGCCGATGGC
CTTGCCATTG TCGCCCTTCT CGGTACCTTA TCTGCCGCCA CCGGTATGGT GATAGTGGCG
GTGGTGACCA TCTCCATCAT GATAAGTAAC GAATGGCTGG TGCCGCTGAT GCTCAGAAGC
GGTCGCATCC GTAAGAAAAA CTTCGCCCAG TTTTCCCAGT TCCTGCTGAA TGCCCGCCGC
TTGGCGATAG TCATCATCCT TGGCATAGGT TACCTGTCGT TTTTGTACCT TGCCGACAGC
GATTCACTGG CTCATTTGGG GATGTTGGCC TTTGGCGCCT TCGCGCAGCT CGCCCCTGCA
CTGGTGGGTG GCCTTTATTG GAAACACGGT AATCGCGCCG GCGTCTTTTT GGGACTGGCG
GCCGGATTTG GGCTTTGGGT GTGGATTTTG CTGCAAGGCG CGGGAGAGCG CGTGGCCAGT
GCGGGGCTCT CGGATGTGTG GCTGTTGTCC TATATTAGCC CAAATGTGTC TGACACCCTG
CTTGCCATCA TGGTGAACTC GGTATTCTAT GTGCTGGGCT CCATCTGGTT CAGGGCCGGG
GTGGTTGAGC GTATTCAGGC CAGTAGCTTT GTATCGCCGG GGGAGCTTAA AACAGCAGGT
AACCGTCGCA CCGGCCCCAT CTCTCAACAG GATTTGCTCA TTTTGGTGAG CCGCTTTGTC
AGCCCCACCC GAGCCTATGA AAGCTTCAGC CGTTTTTCAC CGGAAGCGGT CAATCGTGAC
AGCTGGAACA AGGCCGCATC ACCGGAACTC ATCGCTCACA CGGAACACCT GCTTTCTGGT
GTGCTGGGTG CTTCCAGCGC CGCGTTGGTG CTTGATTCCG TTATCGCGGG TCGGGATTTG
GCGCTGGATG AAGTGCTGTC CCTGGTGGAT GAGGCTTCCT CCAAGGTCAT CCTGAGTCAG
GAGATGCTAA GGGGAGCAAT TGAGCACGCC TATGAAGGCA TCAGTGTGGT GGATAAAGAC
CTGAATCTGG TCGCCTGGAA TGCCCGTTAC GGTGAGCTTT ATCAGTATCC GGATAATTTC
CTGCAGCCGG GCATGCCCAT CAGCGAAGTT ATTCGCTTCA ATGCTGCTCG AGGTTACTGT
GGCGTTGGTG ATATTGAAGA GCAGGTAGAG CGGCGCGTGC AGCATATGCG AAATGGTACG
CCACACACCT CTGAGCGGGA GCGCAGCGAC GGCAAGGTCA TTAAAATTCA GGGTAACCCC
ATGCCGGATG GTGGTTTCGT GATGACCTTT ACCGACATTA CCCAATACCG TGCCCAGGAG
CGGGCACTGA AAGAGTCCAA TGAAACCCTG GAAAGCAGGG TGAAAGAGCG AACTTATGAG
CTTGCCATGC TCAATAGCCA GCTGTTGGAA GCCAAGGCCC AGGAAGAGAT GGCCAATGCC
TCAAAAAGCC GGTTTTTGGC GGCAGTGGGT CATGATCTGA TGCAGCCCCT CAACGCGGCG
CGGCTATTTA CGGCATCGCT CTCCCAGTAC AGCAACCTTG ATGACGAGGC CCGCACCACC
TTATCCCATG TGAACAGCTC GCTGAAAATC GCCGGTGAGT TGCTAACCGA CCTTCTGGAT
ATCTCCAAGC TGGACTCCGG CATGGTGGAG GTCAACCGAC GGGATTTTGC GGTATCGGAT
ATTCTCTCCG GTTTGGCGGT CGAATTTGAT GCCATGGGCA AGGATAATCA GATTCGTTTT
GCCATGGTGT CGTCCAGCGT GACCATCAAC TCTGACCCGG CACTGCTCAG ACGCGTATTG
CAGAACTTTT TGACCAATGC CTACCGTTAC GCCCGTGGTG GCAGGGTGCT GCTTGGCTGC
CGTCATCGCC CCGGCGAGCT TGAGATCCAG GTGCTGGACA CGGGCTGCGG CATAGATGAG
CGTGAACTTC ACGAAATTTT CAAGGAGTTT AAGCGTCTGT CGAATCCACA CAGCAAGGGC
GTCAGTGGTC TTGGCTTGGG TTTGGCCATT GCAGACAGGA TAAGCAAGGT GCTCGGCCAC
GATATCAAGG TCGCTTCTGT GCTGGGACGG GGCTCGGTGT TTTCTATCTC TGTGCCACTT
GGTAAAACCG TCACTGCGCC TGTGCCAACC CGCAGACCCA CTGTGCTGCA GCCACTGGCC
GGGGTGAAGG TGCTTTGTAT CGACAACGAA GAAGCTATCC TTGCCGGGCT TGAGAGCCTT
CTCAGGCGCT GGCAGTGTGA GGTCATCTGC GCGCGGGATC TGGGTGACGC CCGTATCAAG
TTGGGCCTCA AGGGGCTGGC GCCGGATATA GTGCTGGCGG ATTATCACCT GGATGACGGC
CAGAATGGTG TAGATGCCAT GGACGGGATC CGAGCTCTCT ATGGCGAGCA CTTGCCCGGC
ATTCTTATCA CCGCCAATAC CCGTAAAGAT TTGGTGGAAG ACGTACAGCG CCGTGGCTAC
CACTATATGG CAAAGATGGT TAAACCGGCG GCGCTCAGGG CATTGATTTC AAGTTTGGTG
AAATAA
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| Protein sequence | MNLTLFVAVI AVFYVFLLFL LAWGAERWFS GVTKKLQIWI YGLSLAVYCS SWSFLGTVGQ
SAGDLWSFLP IFLGPILIFT FGFGMLRKMV VVSKAQNITS VADFIAARYG KSQGLAALVT
LIALFGIMPY IALQLKAMVA SLNLFQEAGQ PLDGMSVALI ISVVLAVFAI LFGTRKLDAT
EHNPGMMLAI AFESLVKLAA FLLVGLVISF GVFDGFSDIW QQADEAGIIQ HPKLRLEAIL
PDLVVGIAAF LCMPRQFHVM VVECAGEGVL RRGRWIFPVY IALFGLFVAP LALAGKLLLG
DSVPADSYVI NLPLALNADG LAIVALLGTL SAATGMVIVA VVTISIMISN EWLVPLMLRS
GRIRKKNFAQ FSQFLLNARR LAIVIILGIG YLSFLYLADS DSLAHLGMLA FGAFAQLAPA
LVGGLYWKHG NRAGVFLGLA AGFGLWVWIL LQGAGERVAS AGLSDVWLLS YISPNVSDTL
LAIMVNSVFY VLGSIWFRAG VVERIQASSF VSPGELKTAG NRRTGPISQQ DLLILVSRFV
SPTRAYESFS RFSPEAVNRD SWNKAASPEL IAHTEHLLSG VLGASSAALV LDSVIAGRDL
ALDEVLSLVD EASSKVILSQ EMLRGAIEHA YEGISVVDKD LNLVAWNARY GELYQYPDNF
LQPGMPISEV IRFNAARGYC GVGDIEEQVE RRVQHMRNGT PHTSERERSD GKVIKIQGNP
MPDGGFVMTF TDITQYRAQE RALKESNETL ESRVKERTYE LAMLNSQLLE AKAQEEMANA
SKSRFLAAVG HDLMQPLNAA RLFTASLSQY SNLDDEARTT LSHVNSSLKI AGELLTDLLD
ISKLDSGMVE VNRRDFAVSD ILSGLAVEFD AMGKDNQIRF AMVSSSVTIN SDPALLRRVL
QNFLTNAYRY ARGGRVLLGC RHRPGELEIQ VLDTGCGIDE RELHEIFKEF KRLSNPHSKG
VSGLGLGLAI ADRISKVLGH DIKVASVLGR GSVFSISVPL GKTVTAPVPT RRPTVLQPLA
GVKVLCIDNE EAILAGLESL LRRWQCEVIC ARDLGDARIK LGLKGLAPDI VLADYHLDDG
QNGVDAMDGI RALYGEHLPG ILITANTRKD LVEDVQRRGY HYMAKMVKPA ALRALISSLV
K
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