Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2062 |
Symbol | mnmA |
ID | 4604312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2497940 |
End bp | 2499073 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639781439 |
Product | tRNA-specific 2-thiouridylase MnmA |
Protein accession | YP_927937 |
Protein GI | 119775197 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000391472 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGTCAA CTACAGCTTC TCCCGCTGAA ATCGCTGCCA ACAGCAGCAA AAAAGTCATT GTCGGCATGT CCGGCGGTGT GGACTCTTCT GTCTCTGCGT ACCTTTTGAA ACAACAGGGG TATCAGGTTG AAGGCCTGTT CATGAAAAAC TGGGAAGAAG ATGACACCGA CGAATACTGC GCCGCCGCTG AAGATCTGAA AGATGCTCAG GCCGTGTGCG ATAAGCTCGG CATCAAGCTG CATACAGTGA ACTTTGCCGC CGAGTATTGG GATAACGTGT TTGAGTACTT CCTCGCCGAA TACAAGGCCG GCCGTACCCC AAATCCCGAC ATCATGTGCA ACAAGGAAAT CAAATTCAAA GCCTTCCTTG AATTTGCGGA TGACATCCTC GATGCCGATT ACATCGCCAT GGGCCACTAC GTGCGCCGCC GCGACACAGA CGGTAAAACC GAAATGCTGC GCGGCATCGA TGGCAATAAA GATCAAAGCT ACTTCCTGTA CACCTTAAGC CACGAGCAGG TTGCCCGCAG CCTGTTCCCT GTTGGCGAAC TGGAAAAGCC AGAAGTACGC CGTATCGCCG AAGAGCAAGG GCTTATCACC CACGATAAGA AAGATTCCAC CGGTATCTGC TTTATTGGAG AGCGCAAGTT TAAAGACTTC CTCGCTACCT ACCTGCCCGC CCAACCCGGT AACATCGAAA CGCCTGAAGG CGACATCATT GGCCGCCATG AAGGCCTGAT GTATCACACC CTCGGCCAGC GTAAAGGCTT AGGGATTGGC GGCATGAAAA ATTCAAACGA CGATCCCTGG TATGTGGTTG ACAAAGACAT GGCCCGTAAC GTGTTGGTGG TGGCACAGGG CCACGAGCAT CCACGGTTGA TGTCAAAGGG CATGCGCGTT AACCAGCTGC ACTGGGTTGA CCGTACTGGC CCGGCAGATG GCGCAACCAT CAGCGTGAAA ACCCGTTATC GCCAGCAGGA CATCCCCTGC ACCGTGAAGA TTATCGATGA GCAAACCATC GAAGTGCTGT TTGATGAGCC GGTGGCCGCC GTCACCCCCG GTCAGTCAGC GGTGTTTTAC GATGGCGAAG TCTGCCTCGG CGGCGGCATT ATCGACACCC TGATAAAGGA CTGA
|
Protein sequence | MTSTTASPAE IAANSSKKVI VGMSGGVDSS VSAYLLKQQG YQVEGLFMKN WEEDDTDEYC AAAEDLKDAQ AVCDKLGIKL HTVNFAAEYW DNVFEYFLAE YKAGRTPNPD IMCNKEIKFK AFLEFADDIL DADYIAMGHY VRRRDTDGKT EMLRGIDGNK DQSYFLYTLS HEQVARSLFP VGELEKPEVR RIAEEQGLIT HDKKDSTGIC FIGERKFKDF LATYLPAQPG NIETPEGDII GRHEGLMYHT LGQRKGLGIG GMKNSNDDPW YVVDKDMARN VLVVAQGHEH PRLMSKGMRV NQLHWVDRTG PADGATISVK TRYRQQDIPC TVKIIDEQTI EVLFDEPVAA VTPGQSAVFY DGEVCLGGGI IDTLIKD
|
| |