| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2059 |
|---|
| Symbol | |
|---|
| ID | 4604309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2493959 |
|---|
| End bp | 2496184 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639781436 |
|---|
| Product | isocitrate dehydrogenase (NADP(+)) |
|---|
| Protein accession | YP_927934 |
|---|
| Protein GI | 119775194 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0165822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.66664 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATA ATTCCCCAAC GATTATTTAC ACTGAAACCG ATGAGGCGCC AGCACTCGCT
ACCCTGTCCC TGCTGCCTAT CCTTCAGACA TTTGCCGAGC CAGCCGGCGT GAAGATCGAA
ACCCGCGACA TCTCTCTGTC CGGTCGCGTT ATTGCTACTT TTCCTGAGAA GCTGACCGAT
GCCCAGCGCA TTGGCGATCA CCTGGCTGAA CTGGGCGAAC TGGCCACCAA GCCAGAAGCC
AACATCATCA AGCTGCCAAA CATCTCTGCT TCTATCCCAC AGCTCAAAGC CTGTATTAAA
GAGCTGCAGG CTCAGGGTTA TGACATCCCT AACTATCCTG AAGAGCCAAA GACTGATGAA
GAGAAGTCTA TCAAGGCCCG TTACGACAAG ATTAAAGGCA GTGCAGTAAA CCCTGTACTG
CGTGAAGGTA ACTCCGACCG CCGTGCGCCG CTGTCAGTGA AAAACTATGC CCGCAAGAAC
CCACACTCCA TGGGCAAGTG GGCAAGCGAC TCCAAGTCTC ACGTATCTCA TATGGAAGCC
GGTGATTTTT ACGGCTCTGA GCAGTCTGTG ACATTGGCCG ATGCCGATAG CGTCAGCATA
GTGCACACCA GCAAAGCCGG TGTGGAAACC GTTCTGAAAT CAGGTCTTAA GCTGCAAGCC
GGTGAAATCA TCGACTCAGC TGTGATGAGC AAAAATGCCC TGGTTGCCTT CTTTGAGCGC
GAAATCGAAG CCGCCAAGGC AGAAGATGTG CTGCTGTCGC TGCACCTGAA AGCCACCATG
ATGAAGGTGT CTGACCCCAT CATGTTTGGT CACGCTGTTA AAGTGTTTTT CAAGCCACTG
TTCGCCAAGC ATGCCGAAAC CTTCGAACGT CTGGGTGTGG ATGTAAACAA CGGTTTTGGT
GACGTGGTTG CCAAAATCCA GTCTCTGCCG GAAGCCGAGC GCGCCGCCAT CGAAGCCGAT
ATCCAGGCCG TGTACGCCGA GCGTCCTGCC ATGGCCATGG TGAACTCTGA CAAGGGCATC
ACCAACCTGC ACGTACCAAG TGACATCATC ATCGATGCCT CCATGCCTGC GGCTATCCGC
TCTTCAGGCC AGATGTGGGG CCCGGACGGC CAGCTTAAAG ACACCAAGTT TATGATCCCG
GATCGCTGCT ATGCCGGTGT GTACGATGCC ACCATCAACT TCTGTAAAGC GCACGGCGCC
TTCGATCCCC GCACCATGGG TACCATCCCT AACGTGGGCC TGATGGCGCA GAAAGCCGAA
GAGTACGGCA GCCACGACAA AACCTTTGAA ATCGCCGAAG ACGGCGTGGT GACTGTGGTT
AACGCGGCGG GTTCTGTGCT GATGAGCCAC ACTGTTGAAG CCGGTGACAT CTTCCGTATG
TGTCAGGTGA AAGACGCGCC AATCCAGGAT TGGGTGAAGC TCGCCGTTCG TCGCGCCCGC
TTGTCTGAGA CTCCAGCGGT GTTCTGGCTT GATAAAAACC GTGCCCACGA TGCTGAGCTG
ATCAAGAAGG TGGAAGCCTA CCTGCCACAG CACGACACCT CAGGTCTGGA AATTCACATC
ATGTCTCCGG TTGAAGCAAC CCAGTTCTCG CTGGCGCGCA TGAAAGATGG CAAAGACACC
ATCTCAGTTA CCGGTAACGT ACTGCGTGAC TACCTGACTG ACCTGTTCCC CATCCTTGAA
CTCGGTACCA GCGCCAAGAT GCTGTCGATC GTGCCTTTGA TGAATGGCGG CGGTCTGTTT
GAAACCGGTG CCGGTGGCAG CGCGCCCAAG CACGTTGAGC AGGTTCAGAG CGAAAACTAC
CTGCGTTGGG ATTCACTGGG TGAGTTCCTG GCACTGGCTG CATCTTTCGA ACACCTGGCC
CAAACCGCCG GTGTTGCCAA GGCGCAGGTG CTGGCCGATA CCCTGGATAC TGCTATCGGT
AAGTTCCTGG ACGAAAACAA GTCACCAGCC CGTCGTGTAG GTCAAATCGA CAACCGTGGC
AGCCACTTCT ACCTGGCCAT GTACTGGGCT CAGGCACTGG CCGCGCAAAC TGCCGATGCC
GAGCTTGCTG CTCACTTCGG TCAGTTGGCT GATAAGCTTG CTGCCAACGA AGAAACCATT
TTGGCGGAGC TGATTGGTGT ACAGGGCCAC AGCGTGGATC TCGGCGGTTA CTATCGTCCT
GATTTTGCCA AGGCAAGTGC AGTAATGCGC CCAAGCGCGA CCCTGAACGG CCTGATGAGC
CACTGA
|
|---|
| Protein sequence | MKDNSPTIIY TETDEAPALA TLSLLPILQT FAEPAGVKIE TRDISLSGRV IATFPEKLTD
AQRIGDHLAE LGELATKPEA NIIKLPNISA SIPQLKACIK ELQAQGYDIP NYPEEPKTDE
EKSIKARYDK IKGSAVNPVL REGNSDRRAP LSVKNYARKN PHSMGKWASD SKSHVSHMEA
GDFYGSEQSV TLADADSVSI VHTSKAGVET VLKSGLKLQA GEIIDSAVMS KNALVAFFER
EIEAAKAEDV LLSLHLKATM MKVSDPIMFG HAVKVFFKPL FAKHAETFER LGVDVNNGFG
DVVAKIQSLP EAERAAIEAD IQAVYAERPA MAMVNSDKGI TNLHVPSDII IDASMPAAIR
SSGQMWGPDG QLKDTKFMIP DRCYAGVYDA TINFCKAHGA FDPRTMGTIP NVGLMAQKAE
EYGSHDKTFE IAEDGVVTVV NAAGSVLMSH TVEAGDIFRM CQVKDAPIQD WVKLAVRRAR
LSETPAVFWL DKNRAHDAEL IKKVEAYLPQ HDTSGLEIHI MSPVEATQFS LARMKDGKDT
ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVEQVQSENY
LRWDSLGEFL ALAASFEHLA QTAGVAKAQV LADTLDTAIG KFLDENKSPA RRVGQIDNRG
SHFYLAMYWA QALAAQTADA ELAAHFGQLA DKLAANEETI LAELIGVQGH SVDLGGYYRP
DFAKASAVMR PSATLNGLMS H
|
|---|
| |