Gene Sama_2047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2047 
Symbol 
ID4604297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2483007 
End bp2483645 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content50% 
IMG OID639781424 
Producturidine kinase 
Protein accessionYP_927922 
Protein GI119775182 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0572] Uridine kinase 
TIGRFAM ID[TIGR00235] uridine kinase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.20095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.647593 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCGC AGCAATGTGT CATTATTGGT ATTGCAGGGG CCAGTGCATC GGGCAAGAGC 
CTTATCGCAA AAACCATATA TGAAGAGTTG TGCCGTGATT TGGGCACTGA TCAGATAGGT
GTAATAGCAG AAGATGCCTA TTATCGCGAT CAGAGCCATC TGTCCATGGA AGAGCGGGTA
AAAACCAATT ATGACCACCC CAAGGCCATG GACCATGAAT TGTTGGCGCA GCATCTGCGA
AGCCTGAAAG AAGGTGACTC GGTGGAGATC CCGGTATACA GCTACACAGA GCATACCCGG
ATGAGCGATA CCCGCACCAT GACGCCCAAG AAGGTGATTA TCCTCGAAGG CATCTTGCTG
CTGACCGACC CGCATCTGCG TGATCTGATG GATGCCTCGG TATTTATGGA TACACCACTG
GATATTTGTT TCCTGCGCCG TTTGACCCGT GACGTTGCTG AGCGTGGCCG TACCATGGAA
TCGGTCATCA GCCAGTACCA AAAGACGGTA AGGCCGATGT TTTTGCAGTT TATTGAACCG
TCCAAGCAAT ATGCCGACAT CATTGTGCCC CGTGGTGGTA AAAACCGTAT TGCCACTGAT
ATCCTCAAGG CACGTATTCA GCACCTGTTG GCAAAATAA
 
Protein sequence
MNSQQCVIIG IAGASASGKS LIAKTIYEEL CRDLGTDQIG VIAEDAYYRD QSHLSMEERV 
KTNYDHPKAM DHELLAQHLR SLKEGDSVEI PVYSYTEHTR MSDTRTMTPK KVIILEGILL
LTDPHLRDLM DASVFMDTPL DICFLRRLTR DVAERGRTME SVISQYQKTV RPMFLQFIEP
SKQYADIIVP RGGKNRIATD ILKARIQHLL AK