| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2039 |
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| Symbol | yebU |
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| ID | 4604289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2476168 |
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| End bp | 2477571 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639781416 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_927914 |
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| Protein GI | 119775174 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.137623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCAAT TAAATCAAAA ATTTATCAAT AGCATTGCGC AAGAAATGCC GCCACATCTG
TCTATGGATG ATTTCGTCCA CTATTGTGGC TTGCCCCTGC GCCTGTCTAT CCGGGTCAAT
ACCCTGAAAA TCACATCGGA CGCGCTTCGT GCCATACTTG AGCCCCGTGG CTGGCAATTT
GAACCAGTGC CCTGGTGTGA AGACGGTTTT TGGGTAACAG TGCCCGACGA CTGCCAGCCG
GGCAATTTAA CCGAGCACTA TCAGGGCCTG TTTTACATTC AGGAAGCCAG TTCCATGATG
CCGCCTTGCG CACTGTTTAT GGACAAAGAG CCAAGGCAAC TCTTGCTGGA CGTAGCATCG
GCTCCTGGCT CAAAAACCAC CCAGCTGGCC GCACTGATGC ACAATCAGGG GCTTATCATC
GCCAACGAGT ATTCGGCGTC CCGCACCAAG GCATTACACG CCAATTTACA GCGAATGGGT
GTTGCCAATG TGGCCATCAC CCAATTTGAT GGCAGGGTTT TTGGGGCGCA TTTATACGAG
ACGCTGGATG CGATTCAACT GGATGCCCCC TGCAGTGGCG AAGGCACGGT TCGTAAGGAT
CCCTTGAGTC TCAAAAACTG GTGTCCTGAC GAAATTGAAG CCATTGCGGA ACTGCAGCGT
GACTTGATTG ACTCTGCTTT TCAGGCACTG AAACCCGGTG GTGTGCTGGT GTACTCAACC
TGCACATTGA ACCGCCGCGA GAATGAAGAC GTTTGCCACT TTTTAAAAGA GCGCTACGGC
GATGCTGTGG TCTTTGAATC CCTGAATGAC CTTTTTAAAG GTGCAGACAA GGCACTCACG
GAAGAGGGCT TTTTACACAT CTGGCCGCAA ATTTACGACA GCGAAGGCTT TTTTGTCGCC
CGTATTCGAA AAACCGCCAG CGTAGCAAGA AATACGGACG ACCCCAGGTT TGTGAGCAAG
TTTCCTTTTG TTGCAGCCAA CCGCAAAGAG CTAAGCGCCC TTGAAGAGGC GATGTTGGCC
TTGGGTGTGT CTCTGCCGGA AGATGCTGTG ATAGTGACCC GGGATGGCGA GTTTTGGTTA
ATGCCGGCGC CCTTAGACGG CCTGCTCACT AAAATGCGTT TTCAACGGAT TGGCATACGG
CTGGCAGAAA CGCAAAAGCA CGGCATCAAG GTCCGCCATG AAGCAGTGAT GGCGCTGCCT
TGCAATCAGA TGCTGTCAAT TGAACCTGAG GCGGCAAAGC AGTATCTGAT GGGGCGAGAT
ATCGCGCTGG ATAACGCAGG GAAGGCGCAG GGCGAAAAAA TTCTTTCACT GCATGGTGCA
CCGCTGGGCA TTGCCAAGCA TCTGGGAAAT AAGCTTAAAA ATAGCTTGCC GAGGGATCTT
TGCCGCGACA ACGTGCAGAA CTGA
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| Protein sequence | MVQLNQKFIN SIAQEMPPHL SMDDFVHYCG LPLRLSIRVN TLKITSDALR AILEPRGWQF
EPVPWCEDGF WVTVPDDCQP GNLTEHYQGL FYIQEASSMM PPCALFMDKE PRQLLLDVAS
APGSKTTQLA ALMHNQGLII ANEYSASRTK ALHANLQRMG VANVAITQFD GRVFGAHLYE
TLDAIQLDAP CSGEGTVRKD PLSLKNWCPD EIEAIAELQR DLIDSAFQAL KPGGVLVYST
CTLNRRENED VCHFLKERYG DAVVFESLND LFKGADKALT EEGFLHIWPQ IYDSEGFFVA
RIRKTASVAR NTDDPRFVSK FPFVAANRKE LSALEEAMLA LGVSLPEDAV IVTRDGEFWL
MPAPLDGLLT KMRFQRIGIR LAETQKHGIK VRHEAVMALP CNQMLSIEPE AAKQYLMGRD
IALDNAGKAQ GEKILSLHGA PLGIAKHLGN KLKNSLPRDL CRDNVQN
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