Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2036 |
Symbol | |
ID | 4604286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2473361 |
End bp | 2474008 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639781413 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_927911 |
Protein GI | 119775171 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00199441 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAATTT TCAGGCAAAA TCAGCACGGA TCCCACTATG ATAGAAGCTC GTCTCCTATC AATATCAAAG GTATGCAGGA TTCAAAGCCA GATATCAGTG AAGAAACATT GCGCCACTGG TTGGTGGCGG TAGCCAATAA CAGGGACAAA TCGGCCTTCC GCGCCCTGTT TGATCATTTT GGCCCCAAGG TCAGATCCTT TGGGCTGTCG CGTCTTTCGC AACAAGGTCT CGCAATGGAC TTGGTGCAGG AAACCCTCAC CACGGTATGG ACCAAAGCGC ATCTTTTCGA TACCGATCGG GGAAATGTCA GTACCTGGGT GTACGCCATC ATGCGAAATC AGTGTTTTGA CATGCTCAGA CGGGTCCAAC ACAACCGGGA AGATGCCTTT GGTGACGACA TTTGGCCTTT ATTCGATGTC GATACCCATG CGGGCGACCA TGGCGACCAT AAGTTGGACG CATTGCTTAA CCAATATCTT TCAAAGCTAC CCAAGCTCCA ACGTGAGGTG GTTCAAGGCA TATATCTTCA GGAACTCAGC CAACAGGAAC TGGCCGACCG ACTCGGCGTT CCCTTGGGTA CCATCAAGTC CAGATTGCGC CTGGGCCTTG AGAAACTGAA AAGCCTGCTG GAGAAACATC ATGATTAA
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Protein sequence | MQIFRQNQHG SHYDRSSSPI NIKGMQDSKP DISEETLRHW LVAVANNRDK SAFRALFDHF GPKVRSFGLS RLSQQGLAMD LVQETLTTVW TKAHLFDTDR GNVSTWVYAI MRNQCFDMLR RVQHNREDAF GDDIWPLFDV DTHAGDHGDH KLDALLNQYL SKLPKLQREV VQGIYLQELS QQELADRLGV PLGTIKSRLR LGLEKLKSLL EKHHD
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