Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2021 |
Symbol | ushA |
ID | 4604271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2456354 |
End bp | 2458069 |
Gene Length | 1716 bp |
Protein Length | 571 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639781398 |
Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
Protein accession | YP_927896 |
Protein GI | 119775156 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000125326 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACATA AACTGATGAA AGGATTGCTT GCCACTGCGG TACTGGCTGC TCTAACCGGC TGTATGGATG CCGATCCGAA AGAGCCGGTT GTACCAACGA CCTGCGCTGA AGCCGGCGAT GCCTGTAAGA CCTTCACTGT GCTGCATACC AACGACAACC ACGGTCGTTT CTGGGAAAAC AAGGACGGTG AGTACGGCAT GGCTGCCCGT AAGGCGCTGA TTGACCAGAT CCGCGGTGAA GTGGAAGGCA ATGGCGGCGA AGTGCTGCTG CTTTCCGGTG GTGACATTAA TACCGGCGTA CCCGAGTCCG ATCTGCAGGA TGCAGTCCCT GATTTTATCG GTATGACCAA GATTGGTTAC GATGCCATGG CTGTGGGTAA CCACGAGTTT GATAACCCAC TGAATATCCT TGATATGCAA CGCCAGCTGG CTGACTTCCC ATTCCTGTCT GCCAACATCT ACAAGGCCGA TGGTACCCGC TACTTCGATG CTTATAAGGT GTTCGACGTG AACGGTGTCC GTATCGCTGT TGTGGGTCTG ACCACAGAAG ACACTGCCAA GATTGGCAAT CCTGAATTTA TCAGTGAACT GACCTTTACC GATCCAAAAG AAGAAGTGGC CAAAGTTATC AAGGAAATCA AAGACGGCGA TAAGGCCGAT ATGATTTTCG CCGTGACTCA CATGGGTCAC TATGCTGATG CACAAAACGG CAGCAATGCT CCTGGCGATG TGGCCATGGC TCGCAGCCTG AACAAGGGCG ATCTGCAACT GGTGATTGGT GGTCACTCTC AAAACCCAGT GTGTATGGAG CCCGGTACCA ACAATTACGC CGATTTCAAA GCGGGTGATG AATGTACCCC TGATCAGCAA AACGGTACCT GGATCATGCA GGCTCATGAG TGGGGCAAGT ATGTTGGCCG TGCCGACTTT GAATACTTCA ATGGTGAACT GCACCTGGCT GGTTACAAGC TCATCCCGGT TAACCTGAAG AAAACCGTTG AGGATGAGTC AGGCAACAAG AGTAAGGTAC TGGTAGGTGA TGCCATTACC CCGGATGCCG AGCTGAAAGA GCTGCTGCAG TACTATCAGG ATAAAGGTCA GGCTTCTTTG GATGAAGTGA TTGCTACCAC AGACGATAAG CTGGAAGGCG ATCGCACTAT GGTACGTGGT CAGCAAACCA ACCTGGGCCG TCTGCTTGCC ATGGCACAGT CTGTAAAAGT GAATGCCGAC GTGGGTGTAA TGAACTCAGG CGGTGTGCGT GCCTCCATCG CGGCCGGTGA TATCTCTTAC CGTGACGTAC TGACTGTACA GCCATTTGGC AACATGGTGA CCTTAAGCAC CATGACAGGC GCCGAGCTGA CTGAGTACCT GGGCGCCGTT GCCTCTATGC AGCGTGGTTC AGGTGCATAC GCTCAAATCA CCGGTGTGAA AATGACAGTG GATTGTACTG CCAAAACCGT GGCCATCAGC GATGTAAACG GTAAAGGTTA CGATGCCGGT GCCTCTTACA CCTTTACTGT TCCAAGCTTC AACGCCGCTG GCGGTGATGG CTACCCAGTA CTGGCGCCTG TTCAAACAGG TTATGTAGAT GCCGACGTGC TGTACGACTT CTTCAAGCAG AAGGGCAGCA TCAAGGCCGC CGATTACAAC CCTATGGGTG ACATCGTTTA CGAAAACTCC AACAGCCCAC TGGGTTGTGA AGTGACTGCT CAGTAA
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Protein sequence | MSHKLMKGLL ATAVLAALTG CMDADPKEPV VPTTCAEAGD ACKTFTVLHT NDNHGRFWEN KDGEYGMAAR KALIDQIRGE VEGNGGEVLL LSGGDINTGV PESDLQDAVP DFIGMTKIGY DAMAVGNHEF DNPLNILDMQ RQLADFPFLS ANIYKADGTR YFDAYKVFDV NGVRIAVVGL TTEDTAKIGN PEFISELTFT DPKEEVAKVI KEIKDGDKAD MIFAVTHMGH YADAQNGSNA PGDVAMARSL NKGDLQLVIG GHSQNPVCME PGTNNYADFK AGDECTPDQQ NGTWIMQAHE WGKYVGRADF EYFNGELHLA GYKLIPVNLK KTVEDESGNK SKVLVGDAIT PDAELKELLQ YYQDKGQASL DEVIATTDDK LEGDRTMVRG QQTNLGRLLA MAQSVKVNAD VGVMNSGGVR ASIAAGDISY RDVLTVQPFG NMVTLSTMTG AELTEYLGAV ASMQRGSGAY AQITGVKMTV DCTAKTVAIS DVNGKGYDAG ASYTFTVPSF NAAGGDGYPV LAPVQTGYVD ADVLYDFFKQ KGSIKAADYN PMGDIVYENS NSPLGCEVTA Q
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