Gene Sama_2000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2000 
Symbol 
ID4604250 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2429593 
End bp2430453 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content52% 
IMG OID639781377 
Producthypothetical protein 
Protein accessionYP_927875 
Protein GI119775135 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000240648 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.359463 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGCAA CTTCGACCCT GTTGTTAATG GCATTGGCAG GATTTAGCCA GTGCGCGCTC 
GCCAAGGATA TGACCCTTCG GGTCGGTGGA TTTTACTCTC AGTCTGATTC CAGCATAGAC
GTAACCGATC CTGTGATTGG TGAAGACTTT CGGCTGGATT TCGAGAGCGA CCTCCAGCTC
GCCGAAAACC AGTTCCTGCC CTTTATCGAA TTTGAATACG CCTTTGGCGA CAGACACAAT
TTCTACCTGG ATTGGAAACG TCTGCATCGC AGCGCCGAAA CCAACGCCGT CACCCGCCCA
TTTGATGTAC AAATCGACGA TACAGTCTAT TCCGTAAAGG CCGGTGGCCA ACTCAATACC
ACACTGAATA TTGATGTGCT GCGTCTTGGC TATGGTTACG ACCTGCTACA AGGTGACAAT
TACAGCCTGG GCATTACCCT GGGATTACAC ACCATGTTCA TCGAGTCGGT GTTTGAGGGT
GCAATTGGCG CCTGTCTTGC CACCGAGCTG GATGGCGATC TGTGCAGCCA GCGCCCTATT
CCGAGGATTG TGGAAAACAG CGTCACTGCC CCTCTGCCGG ATATTGGCCT CATTGGTCAT
TACGAGTTTT TGCCCGGCTG GCGCTTCTCG GCCCATGGTC AGTACTTCGC CATCAAACTC
GATGATTTGG ATGGCTCACT GACTGACATC CGCGCCGGTG TCAGTGCCGA CCTCGGCGAG
AGCTGGAGCC TGTCACTGGC GTACAATTAT TACAAAGTCG ATGTGGATGT GACCCAGTCT
GCTGAAAACA TCAAAGTGGC CGATTACAAC ATCTTCTACA AGTTTGTTGG CCCAATGATT
TCGGTCAGTT ATCGCTTTTA A
 
Protein sequence
MRATSTLLLM ALAGFSQCAL AKDMTLRVGG FYSQSDSSID VTDPVIGEDF RLDFESDLQL 
AENQFLPFIE FEYAFGDRHN FYLDWKRLHR SAETNAVTRP FDVQIDDTVY SVKAGGQLNT
TLNIDVLRLG YGYDLLQGDN YSLGITLGLH TMFIESVFEG AIGACLATEL DGDLCSQRPI
PRIVENSVTA PLPDIGLIGH YEFLPGWRFS AHGQYFAIKL DDLDGSLTDI RAGVSADLGE
SWSLSLAYNY YKVDVDVTQS AENIKVADYN IFYKFVGPMI SVSYRF