Gene Sama_1980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1980 
Symbol 
ID4604230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2408589 
End bp2409335 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content52% 
IMG OID639781357 
Product3-oxoacyl-(acyl-carrier-protein) reductase 
Protein accessionYP_927855 
Protein GI119775115 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000830224 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000580002 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCTGTAT CTTTGGATCT GACCGGCAAG GTAGCCCTGG TTACCGGTGC CAGCCGCGGT 
ATCGGTAAAG CCATCGCACT GACCCTGGCC GAAGCCGGCG CAACTGTTGT GGGTACTGCC
ACAAGTGAGA AAGGCGCCGC AGCCATTTCC GATTATCTGG GTGACAAGGG TTTTGGTCTG
GTACTTAACG TCACCAGCAG TGAATCCGTT GCCGAAATGT ATACCGCGAT CAAAGAAAAA
GCAGGAGATG TTGATATTCT GGTCAACAAT GCCGGTATCA CCCGCGACAA CCTGCTGATG
CGCATGAAAG ACGAAGAGTG GGAAGAGATA ATCGACACCA ACCTCACGTC TTTGTACCGC
CTGTCCAAGC CGGTAATGCG CAGCATGATG AAAAAGCGTC ATGGCCGTAT CATCAGCATT
GGTTCAGTGG TTGGCACCAT GGGTAATGCC GGACAGGTAA ACTACTCAGC TGCTAAAGCC
GGTTTGATTG GATTTACAAA ATCTCTCGCC AGAGAGGTTG CATCTCGTCA AATTACGGTT
AATGCTATTG CTCCTGGATT TATCCAGACT GACATGACCG ACGAGCTGAC GCCTGAGCAG
CAGCAAGGCA TCATGTCACA GGTGCCGATG GAAAGATTAG GGCAGGCGCA GGAAATTGCT
AATGCCGTCC TGTTCTTGGC CTCGGACGCT GCCGCTTACA TCACGGGTGA AACCCTGCAT
GTAAACGGCG GAATGTACAT GGTTTAA
 
Protein sequence
MSVSLDLTGK VALVTGASRG IGKAIALTLA EAGATVVGTA TSEKGAAAIS DYLGDKGFGL 
VLNVTSSESV AEMYTAIKEK AGDVDILVNN AGITRDNLLM RMKDEEWEEI IDTNLTSLYR
LSKPVMRSMM KKRHGRIISI GSVVGTMGNA GQVNYSAAKA GLIGFTKSLA REVASRQITV
NAIAPGFIQT DMTDELTPEQ QQGIMSQVPM ERLGQAQEIA NAVLFLASDA AAYITGETLH
VNGGMYMV