| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1964 |
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| Symbol | |
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| ID | 4604214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2393261 |
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| End bp | 2394136 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781341 |
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| Product | spermidine synthase |
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| Protein accession | YP_927839 |
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| Protein GI | 119775099 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.569543 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.368438 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGACA ACAATCTATA TTTCGAGACG CTGCACAGCG GCTATGGTCA ATATTTCGAG
ATAGACAAGG TGCTCTTCGA GCAAAAGACC AGTCAGTGGC ATTTATCAAT TTTTGAAAAT
GCCCGTTTTG GCAGGGTGAT GGCCCTCAAT GGCGCCATTC AAACCACCGA AGCGGATGAA
TTTGTCTATC ACGAAATGTT GACCCACGTG CCGGTGTTGG CACATGGACA GGTTAAAAGC
CTGCTGATTA TCGGCGGTGG CGATGGCGGC ATGCTCCGTG AAGTGGTGAA ACACCAGGCT
ATTGAGCGTA TCGTGATGGT GGAAATTGAT AGCGCCGTTG TGGACATGTG CAAAACCTGG
TTGCCTAATC ATTCTGCCGG CGCCTACGAC GATCCACGAG TGGAGCTGGT TATCGCCGAT
GGCATGGACT TTGTTGCCAA CTGCGCAGAG CGGTTTGATG TGATTATTTC TGACTGTACC
GACCCGGTTG GCCCCGGCGA AGTGCTGTTC AGCTCTGATT TTTATGCGGG CTGTAAACGA
TGCCTTAATG AAAACGGCAT CTTTGTGGCC CAAAATGGGG TGCCCTTTAT GCAGGTTGAA
TCCCTGCAGG ACACGGTGCG CCGTATGAGC AGTTATACCC GGGAGTGTTG GTTTTACATG
GCGGCAGTCC CAACGTACAT TGGTGGTTCC ATGGCATTTG CCTGGGCCAC CGACAATCCT
GAGGCGCGCA AGCTTGACCT TGCAACCCTC GAGGCGCGTT TCAACGAGGC TGGGATCAGT
ACCCGTTACT ACACGCCCGC AGTGCATCAG GCAAGCTTTG CCTTGCCTAA ATACGTCGAA
CAGGCGATCC GGTCAGCCAT GACCGTGACC GCTTAA
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| Protein sequence | MQDNNLYFET LHSGYGQYFE IDKVLFEQKT SQWHLSIFEN ARFGRVMALN GAIQTTEADE
FVYHEMLTHV PVLAHGQVKS LLIIGGGDGG MLREVVKHQA IERIVMVEID SAVVDMCKTW
LPNHSAGAYD DPRVELVIAD GMDFVANCAE RFDVIISDCT DPVGPGEVLF SSDFYAGCKR
CLNENGIFVA QNGVPFMQVE SLQDTVRRMS SYTRECWFYM AAVPTYIGGS MAFAWATDNP
EARKLDLATL EARFNEAGIS TRYYTPAVHQ ASFALPKYVE QAIRSAMTVT A
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