| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1963 |
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| Symbol | |
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| ID | 4604213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2391322 |
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| End bp | 2393232 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781340 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_927838 |
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| Protein GI | 119775098 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.143441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAT GGTCAATTGA CGACGCCCGC GCCGGGTACA ACGTTGCCCA CTGGAGTCAG
GGTTTTTATG GGATCAGCGA CGAGGGTGAG GTAACCGTCT CCCCGGATCC TAAAAATCCC
ACCTTCAAAA TTGGTTTGAA CGCGCTGGCC AAGGATATGG TTAAAGCCGG TGTGAGTTTG
CCAGTGTTGG TGCGTTTCCC GCAAATTCTG CACCACAGAG TTGATCACCT GTGCCAGATG
TTCAATCAGG CCATTCAGAA ATACGAGTAT CAATCTGACT ACCTGCTGGT GTACCCCATC
AAGGTAAACC AACAGCAGAC CGTGGTTGAG GAAATCCTCG CAAGCCAGGT AAGCAAGACT
GTGCCTCAGC TGGGTCTTGA GGCTGGCAGT AAGCCTGAGC TGATGGCTGT GCTTGCCATG
GCGCAAAAGG CCAGTTCAGT AATCGTGTGT AACGGTTACA AAGACAAAGA ATACATTCGC
CTGGCGCTGA TTGGTGAGAA ACTCGGCCAC AGTGTATACA TAGTGCTCGA GAAGATGTCC
GAGCTGCAGA TGGTGCTCGA AGAGTCCAAG AAGCTGGGTG TTACCCCACG CCTGGGTCTG
CGCGCCCGTT TGGCTTTTCA GGGCAAGGGT AAGTGGCAGG CCAGCGGCGG TGAAAAGTCC
AAGTTTGGTC TGTCTGCTGC GCAAATCTTA AAGGTCGTCG AGCGTCTGAA AGATGAAGAC
ATGCTGGAAT CGCTGCAGTT GCTGCACTTC CACCTGGGTT CGCAAATCGC CAACATCCGT
GATATTCGCC ACGGTGTAGG TGAGGCCGCA CGTTTCTACT GTGAACTGCG TAAACTGGGC
GCCAAGGTTA ACTGCTTTGA CGTGGGCGGC GGCTTGGCCG TGGATTACGA CGGTACCCGC
AGTCAGTCAA ACAACTCCAT GAACTACGCG CTGGCAGAAT ACGCCAACAA CATCGTATCT
GTGCTCACCG ATGTGTGTAA TCAGAACGAA CAGCCAATGC CGCGCATTAT TTCTGAGTCA
GGCCGTTACC TCACTGCCCA CCACGCGGTA CTCATCACCG ACGTGATTGG CACCGAGGCA
TACAGCCCGG AAGACATTCC TGCGCCGGAA GAAGAAGCGC CTCAGCTGCT GCACAACATG
TGGCGTAGCT GGAATGAAAT CAGCTCACGT CTCGATCAGC GTGCTCTGAT TGAAATCTTC
CACGATACTC AGTCTGATCT GGCCGAGGCC CAATCCCTCT TTGCGTTGGG ACAGCTGAGC
CTGGAAGACC GCGCCTGGGC CGAGCAGTGT AACCTTGCTG TGTGTCACGA GTTGCAGGGC
TTGATGAACG CCCGTAACCG TTATCAGCGC CCGATCATCG ATGAACTGAA CGAGAAACTG
GCTGACAGAT TCTTTGTTAA CTTCTCCTTA TTCCAGTCAC TGCCCGATGC CTGGGGTATC
GACCAGGTAT TCCCTGTGCT GCCGCTGTCA GGTTTGGACA AGGTGCCTGA GCGCCGTGCT
GTGATGCTGG ATATCACCTG TGACTCAGAC GGTATTGTTG ACCAATACGT AGATGGTCAG
GGTATTGAAA CCACGCTGCC GGTACCTAAC TGGTCAGCTG AAGATCCGTA TCTGATTGGC
TTCTTCCTGG TGGGTGCTTA TCAGGAAATC CTCGGCGACC TGCACAACCT CTTTGGTGAT
ACCAACTCAG CAGTGGTGCG TATCGACGAA GAAGGCCAGA CCAATATCGA GTCTGTACTT
GCCGGTGATA CGGTAGCCGA CGTACTGCGC TATGTGAACC TCGATGCCGT GTCCTTCATG
CGCACCTACG AGGAGCTGGT GAATTCACAC ATCGCAGAAG ACGAGCGCGC GATGATCCTC
GAAGAACTCC AGGTGGGCCT CAAGGGCTAC ACCTATCTGG AAGACTTTTA A
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| Protein sequence | MNEWSIDDAR AGYNVAHWSQ GFYGISDEGE VTVSPDPKNP TFKIGLNALA KDMVKAGVSL
PVLVRFPQIL HHRVDHLCQM FNQAIQKYEY QSDYLLVYPI KVNQQQTVVE EILASQVSKT
VPQLGLEAGS KPELMAVLAM AQKASSVIVC NGYKDKEYIR LALIGEKLGH SVYIVLEKMS
ELQMVLEESK KLGVTPRLGL RARLAFQGKG KWQASGGEKS KFGLSAAQIL KVVERLKDED
MLESLQLLHF HLGSQIANIR DIRHGVGEAA RFYCELRKLG AKVNCFDVGG GLAVDYDGTR
SQSNNSMNYA LAEYANNIVS VLTDVCNQNE QPMPRIISES GRYLTAHHAV LITDVIGTEA
YSPEDIPAPE EEAPQLLHNM WRSWNEISSR LDQRALIEIF HDTQSDLAEA QSLFALGQLS
LEDRAWAEQC NLAVCHELQG LMNARNRYQR PIIDELNEKL ADRFFVNFSL FQSLPDAWGI
DQVFPVLPLS GLDKVPERRA VMLDITCDSD GIVDQYVDGQ GIETTLPVPN WSAEDPYLIG
FFLVGAYQEI LGDLHNLFGD TNSAVVRIDE EGQTNIESVL AGDTVADVLR YVNLDAVSFM
RTYEELVNSH IAEDERAMIL EELQVGLKGY TYLEDF
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