Gene Sama_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1953 
SymbolpheS 
ID4604203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2381027 
End bp2382010 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content51% 
IMG OID639781330 
Productphenylalanyl-tRNA synthetase subunit alpha 
Protein accessionYP_927828 
Protein GI119775088 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0016] Phenylalanyl-tRNA synthetase alpha subunit 
TIGRFAM ID[TIGR00468] phenylalanyl-tRNA synthetase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00432412 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAAT TAACAGAGAT TGTGGAACAG GCTCTGGCCG CCATCGAACA GGCGACAGAT 
CTGAAGGTTC TGGACGATAT CCGGGTTGAT TATCTCGGTA AAAAAGGCCA GATCACCGAC
CTAATGAAAC TGATGGGCAC CCTGAGTGCA GAAGAGAAGC CCAAGTTCGG TCAGGCAGTA
AACGATGCCA AACAGAGCGT TCAGGCCAAA CTCGGTGAGC AGATGGAGCT GTTTAAAGCC
CGCGAACTGG AAGCCAAACT GGCCGCAGAG CAAATCGACG TGACTCTGCC AGGGCGTACT
CTGGATAATG GCGGCCTGCA CCCAGTGACC CGCACCATTG AACGTATTGA ATCTTTCTTT
GGCGAGCTTG GTTTTACCGT TAAGCAAGGT CCAGAAATCG AAGATGACTT CCACAACTTC
GATGCGCTGA ACATTTCTGA ACATCATCCG GCCCGTGCCG ACCACGATAC CTTTTATTTC
AATCCCAAGG TGATGTTGCG TACCCAAACC TCGGGCGTGC AAATTCGCAC CATGGAAACG
GAAAAACCAC CGCTGCGGAT TATCTCTCCC GGCCGTGTGT ACCGTAACGA CTACGACATG
ACCCATACCC CGATGTTCCA TCAGGTGGAA GGTCTCTTGG TGGATGAAAA CGTTAACTTT
GCAGAGCTTA AAGGCATTCT GCATGATTTC CTGCGTAACT TTTTTGAAGA AGACCTGCAG
GTACGTTTCC GTCCGTCTTA CTTCCCATTT ACCGAACCTT CAGCCGAAGT GGACGTAATG
GGCAAAAATG GCAAGTGGCT CGAAGTGCTC GGTTGCGGCA TGGTACACCC CAACGTACTG
CGCAGCGTGG GTATCGACCC TGAGAAGTAT TCCGGTTTTG CTTTTGGTAT GGGTGTTGAG
CGTTTGACCA TGCTGCGCTA TGGCGTAAAC GATCTGCGCG CATTCTTCGA AAACGACCTG
CGTTTCCTCA AGCAATTCAA ATAA
 
Protein sequence
MQQLTEIVEQ ALAAIEQATD LKVLDDIRVD YLGKKGQITD LMKLMGTLSA EEKPKFGQAV 
NDAKQSVQAK LGEQMELFKA RELEAKLAAE QIDVTLPGRT LDNGGLHPVT RTIERIESFF
GELGFTVKQG PEIEDDFHNF DALNISEHHP ARADHDTFYF NPKVMLRTQT SGVQIRTMET
EKPPLRIISP GRVYRNDYDM THTPMFHQVE GLLVDENVNF AELKGILHDF LRNFFEEDLQ
VRFRPSYFPF TEPSAEVDVM GKNGKWLEVL GCGMVHPNVL RSVGIDPEKY SGFAFGMGVE
RLTMLRYGVN DLRAFFENDL RFLKQFK