Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1933 |
Symbol | |
ID | 4604183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2359614 |
End bp | 2360729 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639781310 |
Product | ribonuclease D |
Protein accession | YP_927808 |
Protein GI | 119775068 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000115292 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGGAGT TTCACTACGT AAAGGACGAT GAAGCGCTGA CCGCTTTGGT CGACCAATAC AGCCAAAGCC GATTATTGGT ATTGGACACC GAGTTTGTGC GTACCCGTAC CTATTACGCC AAGTTGGGTC TAATTCAGGT ATACGATGGC AATACTCTGG CCCTGATAGA CCCGCTCGAT ATTCAGGATT TATCTGGCTT TTGGGCGCTG CTTACCAACC CGAATATCCT TAAGTTGGTT CATTCCTGCT CTGAAGATCT GGAAGTCTTT GCCCGTTATG GCAAGGTTCA GCCCACCCCC CTGTTTGATT CGCAGATTGC GGCCGCGCTC AGTGGGATGG GCCATGGACT TGGCTATGCC AAACTGGTCG AAGAATGTTT GGGGCAGACC CTGGACAAGG GAGAATCCCG TACAGACTGG ATAAAGCGCC CTCTGACCGA TGCCCAGCTG CAGTACGCCG CCAATGATGT GTTCTATCTG TACCAGCTTT ATCCTCAGCT TGAACAAAAG CTTAAAACGC TGGGCCGCTT CGATTGGGTA CTGGAGGAAG GCGCCCGCCT GACAGAAGGG CGTTTGCAGC GCCCTGAGGC TGCAACGGCA TATCTTAAGG TGAAGAACGC ATTTCAGCTG ACCCCGAAGC AATTGGCCTA CCTGAAAGTG CTGGCAGCCT GGCGGTTGGA GCGCGCACTT GACCGGGACC TTGCGCTTGG CTTTGTGATT AAAGACCACG CCCTGATTGC CCTTGCGAAA AAGCCGCCTC GCTCCATCAG TGATTTATTG AAAATCAACG ATCTCTCTGA GCATGAGAAA CGCATTCACG GCAAGGACAT CCTGAAAGTG TTGCAAAAGG CCGATGTGGA GAATCCACCG GCCGCCATTG ATGTGATTGC ACTCAAGCCC GCTTATAAGC AGGCGTTTAA AAACATCAAG GCCGCGCTCA CCGAGATTTG TGAGCGTGAA GGGTTACCGA GCGAGCTTTT CTGCTCAAAA CGTCATATCC ACGAATATCT CGAGTATCGC TGGCAAGGTG ATGCAGAGGA TACGCCGCTG TTGCTGCAGG GATGGCGCGG GAAACTCGCA ACTGACGTAC TGCAAGCTTT GGTACTGGAA CCCTAA
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Protein sequence | MLEFHYVKDD EALTALVDQY SQSRLLVLDT EFVRTRTYYA KLGLIQVYDG NTLALIDPLD IQDLSGFWAL LTNPNILKLV HSCSEDLEVF ARYGKVQPTP LFDSQIAAAL SGMGHGLGYA KLVEECLGQT LDKGESRTDW IKRPLTDAQL QYAANDVFYL YQLYPQLEQK LKTLGRFDWV LEEGARLTEG RLQRPEAATA YLKVKNAFQL TPKQLAYLKV LAAWRLERAL DRDLALGFVI KDHALIALAK KPPRSISDLL KINDLSEHEK RIHGKDILKV LQKADVENPP AAIDVIALKP AYKQAFKNIK AALTEICERE GLPSELFCSK RHIHEYLEYR WQGDAEDTPL LLQGWRGKLA TDVLQALVLE P
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