| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1928 |
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| Symbol | |
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| ID | 4604178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2356191 |
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| End bp | 2357186 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781305 |
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| Product | membrane-bound lytic murein transglycosylase B |
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| Protein accession | YP_927803 |
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| Protein GI | 119775063 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00139398 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAAGTCAA TATTCTGTAC TTCCCTATCA GCGTTGGCAC TGATGTCTGC CACTGTGATG
GCGCAAAGCG CAGACAGTGG CGGTTTCGCC GACTATCTGG CTGGTCTTAA AGACGTGGCC
GCCAGCCAAA ACCAAATCCG TCCGCAAACC TTAGATACTG TTTTCCCAAA GATTAAGGAG
TTTCGCCTCG CGAAGAGTGA TACGGGTGAA CCCGCAGCAG CGCCAGCGAC TAATCTCGAT
ACTTTTTTGC CACAAACCCT GAATGATGCC CTCGTAGACG AAGCAAAATT TCAATATCAG
GGGCATGCAG AAACCCTGAA CCGTATTGGT AAGCAATATG GTGTTCAGCC GCGCTTTATC
GTAGCGCTTT GGGGGCTTGA GTCCCGCTAT GGCCGAGAGT CCGGTGTGTA CCCTGTATTG
TCTGTCACCG CGTCAAAGGC CTTCAATAAA GAGAAGGAAG CCTTTTTTCG TGAACAGTTT
TTTGCTGCTC TCAAAATAAT CGACAGCAGC AGTTGGCAGC CCGATGACTT GCTTGCGACA
CCCGATGGCC GCATGGGGCA GCCCAAGTTA CTACCTCAGG CCTTTTTGTC AGCAGCAAAA
GATGGCGATG ATGATGGCAA AGCCGATATC TGGAGCAATC CTGCGGATGT ATTTGCAACG
CTTGCTTACT CGCTGCAACA GGCCGGTTGG CGTGAAGATG AAACCTGGGG ACGTCAGGTT
AAAATTCCTG GCGATTTTGA TATGTCTCAG GCTGCCGCAG GGAATAAGAA GTCCTTTTCC
CAGTGGCAGG CCTTGGGGGT AAGGCGCTTT GATGGCACCG ATTTACCTGC CAGGGCCGAT
ATGAAGGTCG AGATGGTCAT GCCCGATGGA CCTAAAGGCA GGGTCTATTT GGTTTACGAC
AACTATCTTG CGCTCAAACG TTGGCATGAC AGTGACTATT TTGCCCTGGC GGTGGTGCAT
CTTTCGGATC GCATCAAGTT TCAACTGGGC GAATAA
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| Protein sequence | MKSIFCTSLS ALALMSATVM AQSADSGGFA DYLAGLKDVA ASQNQIRPQT LDTVFPKIKE
FRLAKSDTGE PAAAPATNLD TFLPQTLNDA LVDEAKFQYQ GHAETLNRIG KQYGVQPRFI
VALWGLESRY GRESGVYPVL SVTASKAFNK EKEAFFREQF FAALKIIDSS SWQPDDLLAT
PDGRMGQPKL LPQAFLSAAK DGDDDGKADI WSNPADVFAT LAYSLQQAGW REDETWGRQV
KIPGDFDMSQ AAAGNKKSFS QWQALGVRRF DGTDLPARAD MKVEMVMPDG PKGRVYLVYD
NYLALKRWHD SDYFALAVVH LSDRIKFQLG E
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