Gene Sama_1918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1918 
Symbol 
ID4604168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2344815 
End bp2346044 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content56% 
IMG OID639781295 
Producturacil-xanthine permease 
Protein accessionYP_927793 
Protein GI119775053 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG2233] Xanthine/uracil permeases 
TIGRFAM ID[TIGR00801] uracil-xanthine permease 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00881195 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGAC TCCTGCTTCC CCTGCAGGGC GCACAAATGT TGTTTGTCGC CTTTGGGGCA 
CTGGTGTTGA TGCCGCTGTT GACGGGCCTG GATACCAGTG TTGCGCTCTT TACCGCCGGC
ATAGGCACCT TGTTGTTTCA GCTGATCACC CGCCGTCAGG TACCCATATT CCTCGCTTCC
TCCTTCGCGT TCATTGCCCC GATCATGTAC TCAGTGCAGA TGTGGGGTGT GGCTGCAACT
ATGGGCGGCT TGGTCGCGGC TGGCTGTGTG TATCTGGTAT TGTCCACGCT GGTAAAACTG
CGGGGAGTTG GCTTTATCCA TCGCCTGTTA CCCCCCGTGG TGGTTGGTCC CGTGATCATT
ATCATTGGCT TGGGACTGGC GCCCGTCGCT GTGAATATGG CGCTCGGTAA GAGTGGCGAT
GGCAGCCTGG TATTGGTTGA AGGAAACACA GCCCTTATCA TCTCGCTGCT GTCCCTTATC
ACCACAGTCT TGGTTGCCGT GCTGGCAAAA GGCCTACTAA AACTCATGCC CATTCTCGCC
GGGATTTTGG TGGGTTATGT GGCCAGCCTT TTTTATGGCG TAGTAAGCTT TGATGCCATG
ACCAATGCCC CCTGGTTTTC CCTGCCAAGC TTTACAGCAC CGGAATTCCA CTGGCAGGCC
ATCCTCTTCA TGATCCCCGT GGCCATTGCT CCTGCGGTCG AGCACATCGG CGACATCCTG
GCTATCTCCA ACGTGACCCG TAAAGACTTT ATGAAAGACC CTGGCCTGCA CCGCACCCTT
GCCGGCGACG GGGTAGCCAC CATTGCTGCA GCCGCCTTTG GCGGACCACC CAATACCACC
TACTCGGAAG TGACAGGCGC GGTCACCTTA ACCCGCAACT TCGACCCCAG GATCATGACC
TGGGCAGCGA TTGTGGCCAT TTTGCTGGCC TTCGTTGGCA AACTTGGTGC CTTGATGCAA
ACCATACCCG TGCCTGTGAT GGGCGGTATC ATGTGCTTGC TGTTCGGCTC GATTGCCGCA
GTGGGCCTTA ATACCCTCAT TCGCAATCAG GTGGATTTGG CCTGCCCACG CAATCTGGCC
ATTGTAGGCG TGACCCTGGT ATTCGGTATT GGCGGCATGG CCTTTGGTAT TGGCTCATTC
AGCCTCACCG GCATCAGTTT GTGCGGCATT GTGGCGATTT TAATGAATCT GGTATTGCCA
CCGTCAGCGC CCGAGCCTGA AAGCCCATAA
 
Protein sequence
MNRLLLPLQG AQMLFVAFGA LVLMPLLTGL DTSVALFTAG IGTLLFQLIT RRQVPIFLAS 
SFAFIAPIMY SVQMWGVAAT MGGLVAAGCV YLVLSTLVKL RGVGFIHRLL PPVVVGPVII
IIGLGLAPVA VNMALGKSGD GSLVLVEGNT ALIISLLSLI TTVLVAVLAK GLLKLMPILA
GILVGYVASL FYGVVSFDAM TNAPWFSLPS FTAPEFHWQA ILFMIPVAIA PAVEHIGDIL
AISNVTRKDF MKDPGLHRTL AGDGVATIAA AAFGGPPNTT YSEVTGAVTL TRNFDPRIMT
WAAIVAILLA FVGKLGALMQ TIPVPVMGGI MCLLFGSIAA VGLNTLIRNQ VDLACPRNLA
IVGVTLVFGI GGMAFGIGSF SLTGISLCGI VAILMNLVLP PSAPEPESP