| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1906 |
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| Symbol | |
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| ID | 4604156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2333917 |
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| End bp | 2335002 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639781283 |
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| Product | HlyD family-like protein |
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| Protein accession | YP_927781 |
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| Protein GI | 119775041 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000977353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA TAGCGTTTCT TTTAGCCCTT GTAGGGGGTG CGGGTGCCTG GTATCTGTAT
TCTCTGGATG AGTCCACCGG TGGTCCCGCT CGTCCTCGCC CTGTGCCCAA TGTCGTCGTG
ACCAAGGTAG CTACCCAGGA AGTACGGGAT GAGGTTGAAG CCCTCGGCAC AACCCACGCC
AACGAGTCTG TTACCATTAC TGCCAAGGTT ACCGACGTTG CCACCAAGGT GAATTTCAGC
GACGGCGATA TCGTCCGCGC AGGACAATTG TTGGTTCAGC TTCAGGATGC CGAGCAGCGC
GCCCGGGTTC AGGTTGCCAA GGTTAAGGTT ATCGACAATC AGCGCGAATT TGACCGTATC
CGTTCGCTGG TGACCAGTCA AACCGTGGCC GAGCTTGAAC GTGACCGGCT GCAAACCCTG
ATTGATACCA GCCGTGCCGA GCTGGAGCAG GCGGAATCTG CACTGCGTGA TCGTGCCATC
ACAGCCCCCT TCGCCGGCCG CCTTGGTCTG CGTCAGGTCA GTCCCGGCGC GCTGGTGACG
CCCGGCACAG CGGTCACAAC CCTCGATGAC ATTTCCACCA TCAAGCTGGA CTTTGCGGTT
CCCGAACGCT TTTTACCTCA GCTGCATCCC GGTAAAGCGG TGGAAGCCCA GGCTGTTGCC
TACGAAGGCC AGCTCTTTAC CGGCAAGGTA ACCTCCATCG ACAGTCGGGT TAATCCTTCT
ACCCGTGCCG TAACCGTACG CGCCGAAATT CCCAACCCCG ATGCCAAACT GCTGCCGGGG
ATGCTGATGA AAATTCGCCT CATCAAAACC AGTCGCGAAG CCATTATGGT GCCTGAATCG
GCCATTATAC CGCTGCAAAA CCGCCACTAT GTATATATGG TGGGCGCCGA CAACAAGGTG
GATCGTCGTG AAGTGACCAT CGGCCTTCGT AAGCGCGGCT GGGCCGAAAT TGTTGATGGT
TTGGCGCTTG GCGAAACCAT CATGATCCGC GGGATCCTCA AGGTTCGCCC CGGCGACCAG
GTGACCCCTG AACTTAAAGA ACACTTCAGC GCATCCGTTG CCTCCGATGA GGAGAACGCT
GCATGA
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| Protein sequence | MKKIAFLLAL VGGAGAWYLY SLDESTGGPA RPRPVPNVVV TKVATQEVRD EVEALGTTHA
NESVTITAKV TDVATKVNFS DGDIVRAGQL LVQLQDAEQR ARVQVAKVKV IDNQREFDRI
RSLVTSQTVA ELERDRLQTL IDTSRAELEQ AESALRDRAI TAPFAGRLGL RQVSPGALVT
PGTAVTTLDD ISTIKLDFAV PERFLPQLHP GKAVEAQAVA YEGQLFTGKV TSIDSRVNPS
TRAVTVRAEI PNPDAKLLPG MLMKIRLIKT SREAIMVPES AIIPLQNRHY VYMVGADNKV
DRREVTIGLR KRGWAEIVDG LALGETIMIR GILKVRPGDQ VTPELKEHFS ASVASDEENA
A
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