| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1905 |
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| Symbol | |
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| ID | 4604155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2330816 |
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| End bp | 2333920 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781282 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_927780 |
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| Protein GI | 119775040 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.209576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCTGA CAGATCTCTC TGTTAAACGT CCGGTATTCG CCTCGGTAAT CAGCTTGCTG
CTGATTGCTT TTGGCTTGGT GGCCTTTGAC AAGCTGCCAC TGCGGGAATA TCCCCATATC
GACCCGCCCG TGGTGTCCAT CGAAACCAAT TACCGGGGCG CCAGTGCCTC AGTGGTGGAA
AGCCGCATTA CCCAGTTGGT GGAAGACCGC GTCAGCGGGG TAGAGGGGAT TCGGCACATC
AGCTCGTCTT CCAGTGACGG TCGCTCGTCC GTAACCCTGG AATTCAACAT CAACCGCGAC
ATTGAAGCGG CTGCCAACGA TATCCGTGAC CGGGTATCGA GTATGCTCAA CAACCTCCCG
GAAGAGGCTG ACCCGCCGGA GATCCGTAAG GCCAACGGCG GCGATGAAGT GATCATGTGG
CTCAATCTGG TGTCTGACAG CATGAACACC CTGGAACTTA CCGATTATGC CAACCGCTAT
CTGGCCGACC GCTTCTCGGC GGTTGACGGG GTGGCCATGC TCCGTCTCGG TGGCGGCAAG
GTCTATGCGC TGCGGATTTG GGTTGACCGT CAGGCGCTGG CGGCGCGAAA TCTGACTGTC
GCCGACATCG AGTCCAAACT GCGCTCGGAA AACGTGGAGC TGCCGGCAGG CTCAGTCGAG
TCCAAAGAAC GTCACTTTAC TGTGCGCCTC GAACGTACCT TCAGAACCTC GGAAGACTTT
GCCAACCTGG TATTGGCCCA GGGTGACGAT GGTTATCTGG TGAAACTCGG CGATGTGGCC
AAGATTGAAC TCGGTTCAGA GGAAGAGCGC ATCATGTTCC GCGGTAACCG CGAGTCCATG
ATTGGCCTTG GGGTCACCAA ACAGTCCACC GCCAACACTC TTGAGGTGGC GCGGGCGGTA
AACAAGCTGG TAGACCAAAT CAATCCGACC CTGCCTCCCG GTATGGAAAT CAAGCGCAGC
TATGACAGCT CGGTGTTTAT TGAAGCCTCC ATCAAAGAGG TATACACCAC GCTTATCATC
GCCATGCTTC TGGTTATTCT GGTGATTTAC CTGTTTCTGG GCAGCGTTCA CGCCATGCTT
ATCCCCGCAG TTACAGTGCC TGTGTCGCTG CTGGGAACCT TTATCGTGCT CTACGCCCTT
GGCTACACCA TTAACCTGCT GACCTTGCTG GCGATGATCC TCGCCATTGG TATGGTGGTG
GATGATGCCA TCGTGATGCT GGAAAACATA CACCGCCGTA TAGAAGAAGG GGAAAGCCCG
CTGGTGGCCT CTTTCCTCGG GGCCCGTGAA GTGGCCTTTG CGGTGGTGGC AACCACTCTG
GTGTTGGTCG CGGTGTTTAT GCCAATCACC TTCCTTGAGG GCGACTTGGG CAAACTCTTT
AAGGAATTTG CGGTGACCAT GAGCGCCGCG GTGATGTTCT CAAGTCTGGT GGCCTTAAGC
TTAAGCCCCA TGATGTGCTC CAAGCTGCTG CGCCCCACCA GTGAAAGCTC CTGGTTGGTG
AAGAAAGTCG ATAAAGGCAT GGATTGGCTC GAGCACACCT ATCGCAGTTC ACTTGAGCGC
ACCATTCGCC ACCCACTGGC GGTGAGCCTC ACCGTTATCG CCGCCCTCGG GCTCAGCGTG
TGGATGATGC AGAAGGTGCC TCAGGAATTC GCTCCCCGCG AAGATAGGGG CTCCATGTTC
CTCATGGTGA ATGGCCCCCA GGGCGCCAGC TATGAGTACA TCGAAAAGTA CATGAACGAA
GTGGAAGAGC GCCTGATGCC CATGGTAGAG AGTGGCGAAA TCAAGCGTTT GCTTATTCGT
GCTCCCCGAG GTTTTGGCCG CTCTGCTGAC TTTTCCAACG GTATGGCAAT TATCGTGCTC
GAAGATTGGT CGGCCCGCCG TAACGCCTTT GACATCATGA ATGATATTCG CGGCAAACTC
TCTGATCTGG CGGGTGTGCA GGCATTCCCC ATCATGCGTC AGGGATTTGG TCGCGGCGTG
GGTAAACCGG TGCAGTTTGT GATTGGTGGC CCTAGCTATG AGGAACTGGC CCAGTGGCGG
GACATTCTGA TGGCCAAGGC GGCAGAAAAC CCCAAATTAC TGGCACTGGA TCACGACTAC
AAGGAAACCA AACCCCAGTT TCGCGTGGTC ATTGACAGAG ACAGAGCCGC CGATTTAGGC
GTATCCATCT CCCACATCGG CCGTACGCTG GAATCCATGC TGGGCTCCCG TCTGGTGACC
ACCTTTATGC GTGATGGTGA AGAGTATGAT GTCATCATTG AAGGTGATCG GGCCAAGCAG
AATACGGCGC AGGACCTGTC GAACATCTAT GTTCGCTCTG ACCGCACCCG TGAGCTAATT
CCGCTCTCCA ACCTGGTGCA TGTACAGGAG TTTGCCGACG CTTCCAGTCT TAACCGCTAC
AACCGGATGC GGGCCATCAC CATTGAAGCC AACCTGGCGG ATGGTTATAG CCTGGGTGAG
GCGCTGGATT ACCTGAACGA CACAGTACGC ACCTATTTGC CTGCCGAAGC CGTGGTGAGC
TACAAGGGAC AGTCCCTTGA CTATCAGGAG TCCGGCAATT CCATGTACTT TGTGTTTGTG
CTGGCCCTCG GTGTGGTATT CCTGGTGCTG GCCGCTCAGT TTGAGAGTTA TATTCACCCT
GCGGTGATTA TGCTTACAGT TCCGCTCGCG ACCCTGGGCG CCTTGATTGG CCTGTGGCTC
ACTGGGCAAA CCATCAATAT TTACAGCCAG ATAGGCATTA TCATGTTGGT GGGATTGGCG
GCGAAGAACG GTATTCTTAT CGTTGAGTTT GCCAACCAGC TGCGTGACAG GGGCGTTGAT
TTTATCGAAG CACTGCTCAC CGCATCGACC CAACGCTTGC GACCTATTCT GATGACGGGT
ATCACCACGG CTGCCGGTGC TGTGCCGTTG GTGATGGCAC AGGGCGCCGG TGCTGAAACC
CGCTTTGTGA TAGGTGTGGT GGTGCTGTCA GGCATCATTC TGGCCACCAT CTTTACCCTG
ATGGTCATTC CAACTGCCTA TGCACTGTTC GCCAGACATT CGGGCTCGCC CGATGCGGTG
GCGCAAAAGC TGGAAGCAGA ACTTGCGGGC AAGGCGAAAC ATTGA
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| Protein sequence | MILTDLSVKR PVFASVISLL LIAFGLVAFD KLPLREYPHI DPPVVSIETN YRGASASVVE
SRITQLVEDR VSGVEGIRHI SSSSSDGRSS VTLEFNINRD IEAAANDIRD RVSSMLNNLP
EEADPPEIRK ANGGDEVIMW LNLVSDSMNT LELTDYANRY LADRFSAVDG VAMLRLGGGK
VYALRIWVDR QALAARNLTV ADIESKLRSE NVELPAGSVE SKERHFTVRL ERTFRTSEDF
ANLVLAQGDD GYLVKLGDVA KIELGSEEER IMFRGNRESM IGLGVTKQST ANTLEVARAV
NKLVDQINPT LPPGMEIKRS YDSSVFIEAS IKEVYTTLII AMLLVILVIY LFLGSVHAML
IPAVTVPVSL LGTFIVLYAL GYTINLLTLL AMILAIGMVV DDAIVMLENI HRRIEEGESP
LVASFLGARE VAFAVVATTL VLVAVFMPIT FLEGDLGKLF KEFAVTMSAA VMFSSLVALS
LSPMMCSKLL RPTSESSWLV KKVDKGMDWL EHTYRSSLER TIRHPLAVSL TVIAALGLSV
WMMQKVPQEF APREDRGSMF LMVNGPQGAS YEYIEKYMNE VEERLMPMVE SGEIKRLLIR
APRGFGRSAD FSNGMAIIVL EDWSARRNAF DIMNDIRGKL SDLAGVQAFP IMRQGFGRGV
GKPVQFVIGG PSYEELAQWR DILMAKAAEN PKLLALDHDY KETKPQFRVV IDRDRAADLG
VSISHIGRTL ESMLGSRLVT TFMRDGEEYD VIIEGDRAKQ NTAQDLSNIY VRSDRTRELI
PLSNLVHVQE FADASSLNRY NRMRAITIEA NLADGYSLGE ALDYLNDTVR TYLPAEAVVS
YKGQSLDYQE SGNSMYFVFV LALGVVFLVL AAQFESYIHP AVIMLTVPLA TLGALIGLWL
TGQTINIYSQ IGIIMLVGLA AKNGILIVEF ANQLRDRGVD FIEALLTAST QRLRPILMTG
ITTAAGAVPL VMAQGAGAET RFVIGVVVLS GIILATIFTL MVIPTAYALF ARHSGSPDAV
AQKLEAELAG KAKH
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