Gene Sama_1894 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1894 
Symbol 
ID4604144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2309910 
End bp2311472 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content50% 
IMG OID639781271 
Producthypothetical protein 
Protein accessionYP_927769 
Protein GI119775029 
COG category[S] Function unknown 
COG ID[COG1322] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCGC TTGACCTTTT TTCTCTTCCC CAATGGATAG CCATTTCCGC CCTTTGTTTT 
CTTTTTCTGA TGATCGGGGC TCTCATTAAT CAGATCCTCA CCCGTAAACG CTGGGAAAGC
CTTGATGCAC TGCGTATTGA GCAGCATCAA GCCGCCATCT GCGCCCTTGA ATCACAATTG
GACGAGCACA AAAACCAACT CGACGATAAA GAAGACCGAC TGAGCTTTTT TCAAAACCGC
ATTGAGGAAG TCAGCCAACG TTACGGTGAA GCCAAGGCTG AGGCACAGCG GTTACCCGAA
CTTGAGCAAA AGCTGGCCGA CACCCATAGA CAATTGATGG AAGCCCGGCT GGAAACCGCC
AAGGCCATCG CCATGCAACA GAGCATCAGT GCCAAGTTTG ACGCCGAGCG GCAGGCGTTC
GAAGAAAAGC TGGCCCTGCT GGAATCAGCA GAAGCCCGGT TAAAATTGCA GTTTGAAAAC
CTTGCAAACA AAATTTTTGA ACAGAGAGCG GAGCAGCTTA AAGGGCAGAA TTTATTGCAG
CTTGATGCGG TAATCGGCCC TCTAAAACAA CAAATTGACG GTTTCAGAAA ACAAGTCAAT
GAATCCTATT CAATTGAACA GGCCGAGCGC AGTAGCCTTA AACATCAGCT CGAACAACTG
GCATCCCTTA ATGTGAAGAT GAGCCAGGAC GCCATCAACC TGACCAACGC CCTCAAAGGT
GACAATAAAC AGCAGGGCAA CTGGGGAGAA GTCATACTGG AGCGGGTGCT CAGTGAAAGC
GGCCTGCGTG AAGGTCACGA GTACCACACC CAGCAAGAAT TGAAGGCCGA GAATGGACAA
AAGTTCAAAC CCGACGTGAT AGTCCACCTG CCCGGCGAAA AAGACGTGGT GATAGACGCC
AAAATGTCGC TCACCGCTTA TGAGCGCTAT TTTAACGCCA GCGAGGATGC CGACAAGGCA
CAGGCCCTCA AAGAGCATGT ACTGTCGGTC AGAAGCCATA TCAAGTTGCT CTCACAAAAG
GATTATCAAC ACCTCCACGG CCTTAAAACC CTCGATTATG TGTTGATGTT TATTCCTGTG
GAACCCGCCT TTTTATTGGC ACTTGAGCAG GAGCCGGGAC TGGTTGGCTA CGCCCTTGAA
CACAATATTA TGCTTGCCAG CCCAACCAAT TTGTTGGTTG CCCTGCGCAC AATTCACAAT
ATCTGGCGAT ACGAATATCA GAATCTGCAT GCACAGCACA TCGCTAAGGC CGCGGGCAAA
ATCTACGACA AACTCTGTAT TTATGTGGAC GAAATGGACA AGTTAGGTCG CTCGCTGGAC
ACGGCGCAGA AAAGTTTTCA ATCAGCGATG GGCAAACTCT CCACCGGCCG CGGTAATCTT
ATTCGTCAAG CCCATCAAAT GCGCCAGCTT GGCGTTGAAA GCAGTAAACA GCTAGACAAG
CAACTGCTTG ACAACGCCCT TGACGACAGC ATGGAAGCCG GAGAGGACGA CGATACTGTA
GCCGACACTC TGGCCGTCAA TGGTTCAACG CCAGTGCCAC ATCTGACTAA CCAGAGACAG
TAA
 
Protein sequence
MTPLDLFSLP QWIAISALCF LFLMIGALIN QILTRKRWES LDALRIEQHQ AAICALESQL 
DEHKNQLDDK EDRLSFFQNR IEEVSQRYGE AKAEAQRLPE LEQKLADTHR QLMEARLETA
KAIAMQQSIS AKFDAERQAF EEKLALLESA EARLKLQFEN LANKIFEQRA EQLKGQNLLQ
LDAVIGPLKQ QIDGFRKQVN ESYSIEQAER SSLKHQLEQL ASLNVKMSQD AINLTNALKG
DNKQQGNWGE VILERVLSES GLREGHEYHT QQELKAENGQ KFKPDVIVHL PGEKDVVIDA
KMSLTAYERY FNASEDADKA QALKEHVLSV RSHIKLLSQK DYQHLHGLKT LDYVLMFIPV
EPAFLLALEQ EPGLVGYALE HNIMLASPTN LLVALRTIHN IWRYEYQNLH AQHIAKAAGK
IYDKLCIYVD EMDKLGRSLD TAQKSFQSAM GKLSTGRGNL IRQAHQMRQL GVESSKQLDK
QLLDNALDDS MEAGEDDDTV ADTLAVNGST PVPHLTNQRQ