| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1891 |
|---|
| Symbol | |
|---|
| ID | 4604141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2306830 |
|---|
| End bp | 2308137 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639781268 |
|---|
| Product | GGDEF family protein |
|---|
| Protein accession | YP_927766 |
|---|
| Protein GI | 119775026 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0989332 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTTT CCAAACGACT CAAACTCAGC GTAGTGATTT CAGGACTTTT GCTGTTTCTG
CTGATGGGTA TATTGCTTTA CTTGGTCGGA ATGGATGTAC GCGGCTATCG TCACAGTTAT
TCCTATCAAC AGGCCCAGGT CACCCTATCC CGGATGTCCG GTGAACTATG GCAGCTCAAT
CGTTATGAAG ATCTACAGGC CTTGGACAAG GCGCGCGAAT TAACCCAATT ACTGGATGAG
CAAATTGGTT TTCTCGAAAA GGACGCCCAG TACAACCCGT TACTGAGCCA CATAAAAAAA
ACCAATCACA ACCTGAAACT GTTAATGCAA TTGTATCCTT CAGCCCCCAG AGAAAATGTA
GAAACCGCCG CCATGCTCAA CGCACGATTC AACACCCTTC TACTAACCAT GCAAGACGAA
ATGGGGGAAA TACGTCACCG CCTGGTGGAG GAGCAGTTCT ATTCCAAACA GTACCTGCTG
CTACTGATTG CGGTGATCCT TTTTCTGTCG ATGTCGGCGG TCATTCTGTT CAATCTCAAG
ACCATGTCAG TATTCAAACA GGGAATGCTG TCCCTCGAAT CAGGAATAAG AGATCTCGCC
AAAGGCAATC TGGAGACACG GGTATGTGAA GATTCGGGCT CCGAATTTAC CGAGTTGTCC
AAACACTTTA ATTGGATGAC ACAGGAGTTA CAGCAAATTA CGGTCAGCAG AGATAAGCTG
CAGGACGAAG TCAATAAACG CACCGAAGTG CTGCAACTGC AAAAGGACAA ATTAAAGTAC
GAAGCGGAAC ATGACTCGCT CACCCGGGTG TACAGCCGTT ATGCGTTTCA TCGATTACTG
GAGCAAAGTT TGAAACGCCT TGCTCGCTCA AATGGCACAG GCGCTCTGCT GTTTATCGAT
ATTGATAAGT TCAAACCCAT CAATGATAAC TACGGCCACA GCATTGGTGA TCATGTGCTG
GTCACTGTTG CTCAGCGGAT CTCCCATACC CTTCGTGAAT CGGATATGGT TGCCCGTATA
GGAGGAGATG AATTTATTGT GTGGCTGGAA CCCATAGAGC ATACCCTGCA ACTGGAGGTG
GTAATCAAAA AGCTGCTGGA TAAACTTCAT CTGGACATTA ATTTTGCTAA TGTCCACCTG
CTGATTGACG TCAGTATCGG TGCGGCTTGC TATCCCCAGG ATGGTACAGG CATAGAAGAG
CTTATCAATG TTGCCGATCG CAACATGTAT GCCTGTAAGC GAGGCGATCG CGACATCAAA
TCAGCTCGAC AAGGGGCTGA AAACCTTGCG GATGAAGGCG GTGTTTAG
|
|---|
| Protein sequence | MTLSKRLKLS VVISGLLLFL LMGILLYLVG MDVRGYRHSY SYQQAQVTLS RMSGELWQLN
RYEDLQALDK ARELTQLLDE QIGFLEKDAQ YNPLLSHIKK TNHNLKLLMQ LYPSAPRENV
ETAAMLNARF NTLLLTMQDE MGEIRHRLVE EQFYSKQYLL LLIAVILFLS MSAVILFNLK
TMSVFKQGML SLESGIRDLA KGNLETRVCE DSGSEFTELS KHFNWMTQEL QQITVSRDKL
QDEVNKRTEV LQLQKDKLKY EAEHDSLTRV YSRYAFHRLL EQSLKRLARS NGTGALLFID
IDKFKPINDN YGHSIGDHVL VTVAQRISHT LRESDMVARI GGDEFIVWLE PIEHTLQLEV
VIKKLLDKLH LDINFANVHL LIDVSIGAAC YPQDGTGIEE LINVADRNMY ACKRGDRDIK
SARQGAENLA DEGGV
|
|---|
| |