| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1871 |
|---|
| Symbol | |
|---|
| ID | 4604121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2281277 |
|---|
| End bp | 2283277 |
|---|
| Gene Length | 2001 bp |
|---|
| Protein Length | 666 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639781247 |
|---|
| Product | sodium/hydrogen exchanger family protein |
|---|
| Protein accession | YP_927746 |
|---|
| Protein GI | 119775006 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAAC ATATCACCGG CATTCTGGCG CTTATTGGAG TGCTTTCGTT GTTTTGCCAG
TGGCTGGGTT GGAAGTTAAG GCTTCCAGCC ATTTTGCCTC TGCTCCTCTG TGGCCTGCTG
CTTGGGCCCG GGCTTGGTTT TCTCAAGCCC GATGCCATTT TTGGCGATCT TCTGTTCCCG
ATGATTTCTC TGGGTGTTGC CATCATCTTA TTTGAAGGTG CATTGACGCT TAACTTCAAA
GAAATCAAAG ACTATGGTCG AATGGTAACC CACCTCGTGA CCATAGGTAT GGTGGTGACC
TGGGTGGCAA TCTCCCTTGC GACTCACTAC TTTATGGGAT TTGATTGGGC GCTGGCCTGG
TTATTCGGTG CTTTGGTGGT GGTGACAGGT CCCACAGTGA TAGTGCCCAT GCTAAGGAGT
GTACGTCCCA AGTCCCAGCT TGCCAGTATC CTTCGCTGGG AAGGCATAGT GATTGACCCC
ATTGGCGCTG TGCTGGCGGT ATTGGTATTT GAATATATCG CGGCCTCCCA AAATGCCACC
GAGCACATTT TGATGTCATT CGGCTCGATT TTGGCGCTGG GTTTTGGTGT CGGAGCCGCC
ATGGGATATG TGGTGGGCTG GGTGCTTCGC AAAGATCTCT TGCCGCATTA TCTGAGAAAC
ACCGCCGTGC TCACCGTGAT GCTGGGCACC TTTGTGGGCT CGAATCTGCT GCAGGAAGAA
TCGGGTCTGC TCACGGTAAC AGTGATGGGT ATTTGGCTTG CCAATATGCG CGGGGTAGAC
ATTGCCGATA TTCTCGAGTT TAAAGAAACC CTGACGGTAC TGATGATTTC GGCGCTGTTT
ATTTTGCTGG CGGCAAGGCT CGACTCCACT GCCATGCTGG ATTTAGGCTG GGGCGGCATT
GGAGTGCTCG CCGTTGCCAT GCTGATTGCC CGGCCACTCA GCGTGTGGCT GTCAGGCATA
GGCACCAATC TTACGGCCCC CGAAAAGTGG TTTTTAAGTT GGGTGGCGCC ACGGGGAATT
GTGGCGGCGG CCGTTTCCTC GCTGTTTGCC ATCAAGCTTG AAGAGCAGGG CGTGCCTGGC
GCCGAGAAAA TTGTGCCTCT GGTGTTTCTG ATTATTATCG GCACTGTGGT TATTCAAAGT
CTTTCAGCAG GCACCTGGGC CCGACTGCTT AAAGTCAAGG CCGACTCTGC CCAGGGACTG
CTGCTCTTTG GAGCCTCGAG CTTTTCCCGC ACCTTTGCCA AATTGTTGAA GACTAAAAAT
ATCAAAGTCA TCCTTGCCGA TACTAACTGG GACAATATTC GTCTGGCGCG GATGGACAAC
ATCCCTGTTT ACTTTGGCAA TCCGGCATCG GAACACGCCG AGACTTATCT GGACTTGACC
GGCATCGGTC GGGTGCTGGT GGTATCACCT TACCGGCAGC TAAATCCTTT GGTGAGTTTT
CATTTTCAGG ATTATTTTGG CGCCGAAAAG GTTTTTGGGC TGAACAATAT GGAAGGCTCC
AGCGCCCGTC ATCTGGCCTC TGAAGTTTAC ATGAAGCGAT TGTGCCTGTT TGGCGAAGGG
ATTTCTTACG CCAAAATCGC CAGCCAGATG GCGAAAGGCG CCATCTTGAA GAGTACCACC
CTGAGGGAAA GTTTTACGCT GGTGGATTTT ATGCGCCGCT ACGGTGAAAG CGTGCTGCCA
TTGGTGTATC TGCAGGATGA AAAGTTGCGT ATTGTCACCG CCGGCAGCGA CATCCCGGCC
ACTGGCATTG AGCTTATCAG TTTGATCCCG GTTGAGTCGC AGCAATACGC CAAAGAGCAG
CAGGAAAAAG AAGCGCTTGA GAAGGCTCTG GCTGAGAAAG AAGACGCTGA ACGCGCTGCG
CTTGAAAAGC TGGCCCGTGA GCAGGAAGAC GCGGCCCGTG AAGCGGCCAG TGAGGCGAAC
GCAGGCTTTG AAGAAGAAAC CGTTGGCAGT CCGGCACTCA AAGAGGGAGG CGGTGAAGGC
AATCAACCGC TCAAAGCCTG A
|
|---|
| Protein sequence | MVEHITGILA LIGVLSLFCQ WLGWKLRLPA ILPLLLCGLL LGPGLGFLKP DAIFGDLLFP
MISLGVAIIL FEGALTLNFK EIKDYGRMVT HLVTIGMVVT WVAISLATHY FMGFDWALAW
LFGALVVVTG PTVIVPMLRS VRPKSQLASI LRWEGIVIDP IGAVLAVLVF EYIAASQNAT
EHILMSFGSI LALGFGVGAA MGYVVGWVLR KDLLPHYLRN TAVLTVMLGT FVGSNLLQEE
SGLLTVTVMG IWLANMRGVD IADILEFKET LTVLMISALF ILLAARLDST AMLDLGWGGI
GVLAVAMLIA RPLSVWLSGI GTNLTAPEKW FLSWVAPRGI VAAAVSSLFA IKLEEQGVPG
AEKIVPLVFL IIIGTVVIQS LSAGTWARLL KVKADSAQGL LLFGASSFSR TFAKLLKTKN
IKVILADTNW DNIRLARMDN IPVYFGNPAS EHAETYLDLT GIGRVLVVSP YRQLNPLVSF
HFQDYFGAEK VFGLNNMEGS SARHLASEVY MKRLCLFGEG ISYAKIASQM AKGAILKSTT
LRESFTLVDF MRRYGESVLP LVYLQDEKLR IVTAGSDIPA TGIELISLIP VESQQYAKEQ
QEKEALEKAL AEKEDAERAA LEKLAREQED AAREAASEAN AGFEEETVGS PALKEGGGEG
NQPLKA
|
|---|
| |