| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1862 |
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| Symbol | |
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| ID | 4604112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2267774 |
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| End bp | 2268499 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781238 |
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| Product | hemolysin III family channel protein |
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| Protein accession | YP_927737 |
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| Protein GI | 119774997 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGCCAA TGCAAGCCAG CAGCGTATCA GATACTGCTC CCGTTAATGT CCCCAATGCC
CCCGCCGATG CTTCAGGCAA TGCCAGTACG GCTGCGTATT GTGAGCGGGA AGAGCTGGCC
AATACCTTAA GCCATGGCAT TGGCGTGCTG GCGGCACTGA TTGGCACAGT CGCTATGTTG
CACGACAGCA TTGGCCATTT GAGTGCACTG CAAACTCTCG GCGTTGGCCT CTATGGCCTG
AGTATGGTAC TGCTGTTTGC CTGCTCTACC GCTTATCACT GGGCCACATC GCCTACGCTC
AAGCGCAAAT TCAAATTGTT TGACCACTGC GCCATTTACC TTTTGATTGC AGGAACCTAC
ACGCCTTTTG TACTCATTAC CCTGGAAGGC GCCGGTGTCG ACTGGGTGCT GGCTGCCATC
TGGTTGTTTG CGCTTGGCGG GATTGGATTC AAGCTTTTGT TTTTACATCG CTTTAAAGCG
TTCAGCCTGC TGCTTTACCT TGCCATGGGC TGGTTGTGTG TGGCGGTGCT CGACAAGATG
ATCGCCGGGC TCAGTGATAC CGGTTTTACC CTGCTGCTCA CCGGCGGCCT GTTTTACAGC
CTGGGCGTGG TGTTTTATGC GGTGAAACGC ATCCCCTTTA ACCATGCCAT ATGGCACCTG
TTTGTGCTTG GCGGCGCCAT CAGTCACTTC CTGTGTATTT ATCTCACTGT GATCCCCAAG
GGCTAA
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| Protein sequence | MPPMQASSVS DTAPVNVPNA PADASGNAST AAYCEREELA NTLSHGIGVL AALIGTVAML
HDSIGHLSAL QTLGVGLYGL SMVLLFACST AYHWATSPTL KRKFKLFDHC AIYLLIAGTY
TPFVLITLEG AGVDWVLAAI WLFALGGIGF KLLFLHRFKA FSLLLYLAMG WLCVAVLDKM
IAGLSDTGFT LLLTGGLFYS LGVVFYAVKR IPFNHAIWHL FVLGGAISHF LCIYLTVIPK
G
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