Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1860 |
Symbol | |
ID | 4604110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2263751 |
End bp | 2265745 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639781236 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_927735 |
Protein GI | 119774995 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAACC GCCGCGAAAC CCGTAAAGCC GCCCAGGACT TTATCGATAA CTTAAAGCCG CTGCGCCGCC CCAATTCCGA AAAGATTTTC ATTGAAGGCT CACGGCCTGA TATCCAGGTG GGCATGCGCC AAATCCATCA AACCGATACC CGTATCGTGA ATACCCGCGG CGAAGAAACC TTTGAGGCCA ACCCACCCAT CAAGGTGTAC GACTGCGCCG GTCCTTATTC AGACCCCAAT GCCGACATCA ATGTGCGCCG AGGCCTGCCC AAGCTGCGTG AAGGCTGGAT TTTAGCGCGT AGCGATACCG AAGAGCTTAA CAGCGCCTCA TCCAACTTTA CCCAGCAGCG TCTCGCCGAT GACGGGCTGG ATCACCTGCG TTTTGATGTG CTGCCAAAGC CGCGCCGCGC CAAGGCCGGT AAGCGGGTTA CCCAGCTGCA TTATGCCCGT CAGGGTATTA TCACCCCTGA GATGGAATAC ATCGCCATTC GCGAAAACAT GGCCCGGGAT GAAGTCACCG ATGAGCAGCT TAACCGCAAA AAACCAGGCG AAGCCTTTGG CGCTCTGGTG AGCAAACCCA TTACCCCTGA GTTTGTCCGT GACGAAGTAG CCCGTGGCCG GGCGATTATT CCGGCCAACA TCAATCACCC CGAAGCGGAG CCTATGATCA TTGGTCGCAA CTTTTTGGTG AAGGTGAACG CCAATATCGG CAACTCGGCC GTGACCTCAT CCATCGAAGA AGAGGTGGAA AAGCTGGTGT GGTCCACCCG CTGGGGCGCA GATACCGTGA TGGACCTGTC CACCGGCCGT TATATTCACG AAACCCGCGA ATGGATTGTG CGTAACTCAC CGGTGCCTAT TGGCACTGTG CCGATTTATC AGGCGCTGGA GAAGGTCAAC GGCATCGCCG AAGATCTTAA CTGGGAAGTA TTCCGCGACA CCCTGATTGA ACAGGCCGAG CAGGGGGTGG ATTACTTCAC CATCCACGCG GGCGTGCTGC TTCGCTACGT GCCCATGACT GCAAAACGGG TTACCGGCAT AGTGTCCCGC GGCGGCTCCA TCATGGCCAA ATGGTGCTTA AGCCACCATC AGGAAAACTT CCTCTACACC CATTTTCGCG ATATTTGCGA GCTTTGCGCC GCCTATGATG TGTCGTTGTC GCTCGGCGAC GGTATGCGTC CGGGCTCCAT TGCCGATGCC AATGACGAAG CCCAGTTTGC TGAGCTCGAA ACCCTGGGGG AGCTGGTAAA AATCGCCTGG GAATACGATG TGCAGACCAT CATTGAAGGT CCGGGCCACA TCCCCATGCA GCTCATCAAA GAGAACATGG ATAAGCAGCT TGAGCACTGC GCAGAGGCGC CGTTTTATAC CCTGGGCCCG CAAACCACCG ACATTGCCCC AGGCTACGAT CACTTCACCT CCGGTATTGG GGCGGCCATG ATTGCCTGGT ATGGCTGCGC CATGCTTTGT TACGTCACGC CGAAAGAACA TTTGGGCCTG CCGAACAAGG AAGATGTAAA ACAAGGGCTT ATTGCTTACA AGATTGCCGC CCACGCTGCC GATGTCGCCA AGGGACATCC CGGCGCGCAA ATCCGCGACA ATGCGCTGTC CAAGGCACGA TTCGAGTTTC GCTGGGAGGA TCAGTACAAC CTCGGGCTGG ATCCCGATAC TGCCCGTGCC TATCACGACG AAACTCTGCC GCAGGAGTCG GCCAAGGTGG CCCATTTTTG CTCCATGTGC GGCCCCAAGT TCTGCTCGAT GAAAATCACC CAGGATGTAC GCGACTATGC GGCCAGTCTG GAGAATGCTG CCCGCAGCGA GGCTGACAGC GTACAGACCC TTGAAGTGGG GGCGGCCGAA AGCTATTCCA AGGCAGAAAG CTACGCCAGG GCGGGTATGG ACAAGATGTC GGCCACCTTT AAACAGACAG GCAGTGCGCT TTACAGCGAG ACTCATGTGG AAGCGGCCCT GAGCACCGAA AAGGAACCGG TGTAG
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Protein sequence | MSNRRETRKA AQDFIDNLKP LRRPNSEKIF IEGSRPDIQV GMRQIHQTDT RIVNTRGEET FEANPPIKVY DCAGPYSDPN ADINVRRGLP KLREGWILAR SDTEELNSAS SNFTQQRLAD DGLDHLRFDV LPKPRRAKAG KRVTQLHYAR QGIITPEMEY IAIRENMARD EVTDEQLNRK KPGEAFGALV SKPITPEFVR DEVARGRAII PANINHPEAE PMIIGRNFLV KVNANIGNSA VTSSIEEEVE KLVWSTRWGA DTVMDLSTGR YIHETREWIV RNSPVPIGTV PIYQALEKVN GIAEDLNWEV FRDTLIEQAE QGVDYFTIHA GVLLRYVPMT AKRVTGIVSR GGSIMAKWCL SHHQENFLYT HFRDICELCA AYDVSLSLGD GMRPGSIADA NDEAQFAELE TLGELVKIAW EYDVQTIIEG PGHIPMQLIK ENMDKQLEHC AEAPFYTLGP QTTDIAPGYD HFTSGIGAAM IAWYGCAMLC YVTPKEHLGL PNKEDVKQGL IAYKIAAHAA DVAKGHPGAQ IRDNALSKAR FEFRWEDQYN LGLDPDTARA YHDETLPQES AKVAHFCSMC GPKFCSMKIT QDVRDYAASL ENAARSEADS VQTLEVGAAE SYSKAESYAR AGMDKMSATF KQTGSALYSE THVEAALSTE KEPV
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