Gene Sama_1860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1860 
Symbol 
ID4604110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2263751 
End bp2265745 
Gene Length1995 bp 
Protein Length664 aa 
Translation table11 
GC content57% 
IMG OID639781236 
Productthiamine biosynthesis protein ThiC 
Protein accessionYP_927735 
Protein GI119774995 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0422] Thiamine biosynthesis protein ThiC 
TIGRFAM ID[TIGR00190] thiamine biosynthesis protein ThiC 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAACC GCCGCGAAAC CCGTAAAGCC GCCCAGGACT TTATCGATAA CTTAAAGCCG 
CTGCGCCGCC CCAATTCCGA AAAGATTTTC ATTGAAGGCT CACGGCCTGA TATCCAGGTG
GGCATGCGCC AAATCCATCA AACCGATACC CGTATCGTGA ATACCCGCGG CGAAGAAACC
TTTGAGGCCA ACCCACCCAT CAAGGTGTAC GACTGCGCCG GTCCTTATTC AGACCCCAAT
GCCGACATCA ATGTGCGCCG AGGCCTGCCC AAGCTGCGTG AAGGCTGGAT TTTAGCGCGT
AGCGATACCG AAGAGCTTAA CAGCGCCTCA TCCAACTTTA CCCAGCAGCG TCTCGCCGAT
GACGGGCTGG ATCACCTGCG TTTTGATGTG CTGCCAAAGC CGCGCCGCGC CAAGGCCGGT
AAGCGGGTTA CCCAGCTGCA TTATGCCCGT CAGGGTATTA TCACCCCTGA GATGGAATAC
ATCGCCATTC GCGAAAACAT GGCCCGGGAT GAAGTCACCG ATGAGCAGCT TAACCGCAAA
AAACCAGGCG AAGCCTTTGG CGCTCTGGTG AGCAAACCCA TTACCCCTGA GTTTGTCCGT
GACGAAGTAG CCCGTGGCCG GGCGATTATT CCGGCCAACA TCAATCACCC CGAAGCGGAG
CCTATGATCA TTGGTCGCAA CTTTTTGGTG AAGGTGAACG CCAATATCGG CAACTCGGCC
GTGACCTCAT CCATCGAAGA AGAGGTGGAA AAGCTGGTGT GGTCCACCCG CTGGGGCGCA
GATACCGTGA TGGACCTGTC CACCGGCCGT TATATTCACG AAACCCGCGA ATGGATTGTG
CGTAACTCAC CGGTGCCTAT TGGCACTGTG CCGATTTATC AGGCGCTGGA GAAGGTCAAC
GGCATCGCCG AAGATCTTAA CTGGGAAGTA TTCCGCGACA CCCTGATTGA ACAGGCCGAG
CAGGGGGTGG ATTACTTCAC CATCCACGCG GGCGTGCTGC TTCGCTACGT GCCCATGACT
GCAAAACGGG TTACCGGCAT AGTGTCCCGC GGCGGCTCCA TCATGGCCAA ATGGTGCTTA
AGCCACCATC AGGAAAACTT CCTCTACACC CATTTTCGCG ATATTTGCGA GCTTTGCGCC
GCCTATGATG TGTCGTTGTC GCTCGGCGAC GGTATGCGTC CGGGCTCCAT TGCCGATGCC
AATGACGAAG CCCAGTTTGC TGAGCTCGAA ACCCTGGGGG AGCTGGTAAA AATCGCCTGG
GAATACGATG TGCAGACCAT CATTGAAGGT CCGGGCCACA TCCCCATGCA GCTCATCAAA
GAGAACATGG ATAAGCAGCT TGAGCACTGC GCAGAGGCGC CGTTTTATAC CCTGGGCCCG
CAAACCACCG ACATTGCCCC AGGCTACGAT CACTTCACCT CCGGTATTGG GGCGGCCATG
ATTGCCTGGT ATGGCTGCGC CATGCTTTGT TACGTCACGC CGAAAGAACA TTTGGGCCTG
CCGAACAAGG AAGATGTAAA ACAAGGGCTT ATTGCTTACA AGATTGCCGC CCACGCTGCC
GATGTCGCCA AGGGACATCC CGGCGCGCAA ATCCGCGACA ATGCGCTGTC CAAGGCACGA
TTCGAGTTTC GCTGGGAGGA TCAGTACAAC CTCGGGCTGG ATCCCGATAC TGCCCGTGCC
TATCACGACG AAACTCTGCC GCAGGAGTCG GCCAAGGTGG CCCATTTTTG CTCCATGTGC
GGCCCCAAGT TCTGCTCGAT GAAAATCACC CAGGATGTAC GCGACTATGC GGCCAGTCTG
GAGAATGCTG CCCGCAGCGA GGCTGACAGC GTACAGACCC TTGAAGTGGG GGCGGCCGAA
AGCTATTCCA AGGCAGAAAG CTACGCCAGG GCGGGTATGG ACAAGATGTC GGCCACCTTT
AAACAGACAG GCAGTGCGCT TTACAGCGAG ACTCATGTGG AAGCGGCCCT GAGCACCGAA
AAGGAACCGG TGTAG
 
Protein sequence
MSNRRETRKA AQDFIDNLKP LRRPNSEKIF IEGSRPDIQV GMRQIHQTDT RIVNTRGEET 
FEANPPIKVY DCAGPYSDPN ADINVRRGLP KLREGWILAR SDTEELNSAS SNFTQQRLAD
DGLDHLRFDV LPKPRRAKAG KRVTQLHYAR QGIITPEMEY IAIRENMARD EVTDEQLNRK
KPGEAFGALV SKPITPEFVR DEVARGRAII PANINHPEAE PMIIGRNFLV KVNANIGNSA
VTSSIEEEVE KLVWSTRWGA DTVMDLSTGR YIHETREWIV RNSPVPIGTV PIYQALEKVN
GIAEDLNWEV FRDTLIEQAE QGVDYFTIHA GVLLRYVPMT AKRVTGIVSR GGSIMAKWCL
SHHQENFLYT HFRDICELCA AYDVSLSLGD GMRPGSIADA NDEAQFAELE TLGELVKIAW
EYDVQTIIEG PGHIPMQLIK ENMDKQLEHC AEAPFYTLGP QTTDIAPGYD HFTSGIGAAM
IAWYGCAMLC YVTPKEHLGL PNKEDVKQGL IAYKIAAHAA DVAKGHPGAQ IRDNALSKAR
FEFRWEDQYN LGLDPDTARA YHDETLPQES AKVAHFCSMC GPKFCSMKIT QDVRDYAASL
ENAARSEADS VQTLEVGAAE SYSKAESYAR AGMDKMSATF KQTGSALYSE THVEAALSTE
KEPV