| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1859 |
|---|
| Symbol | |
|---|
| ID | 4604109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2262173 |
|---|
| End bp | 2263750 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639781235 |
|---|
| Product | phosphomethylpyrimidine kinase/thiamine-phosphate diphosphorylase |
|---|
| Protein accession | YP_927734 |
|---|
| Protein GI | 119774994 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAA TCAACGACAT GGCAGCTAAA CCCATCGTCT GGACTATCGC AGGCTCAGAC
AGCGGCGGCG GCGCCGGTAT TCAGGCGGAT TTGCTGACGC TGCAAGACCT GGGCTGCTAT
GGTTGCAGCG TGATAACCGC CATAACGGCG CAAAACTCGG TGGCGGTGAC GGCGGTTGAG
CCGGTGACAC CAAGGATGCT GCGTGCCCAG CTTGAGACGT TAAAGGCGGA TTTGTACCCC
AGCGCAGTCA AGATAGGCCT TATCGCCAAT CAGCCGCAGC TGGATTTTTT GGCTGACTGG
CTGGGTGAAA ACTTACCCGG CGTGCCAGTT ATTCTTGACC CTGTTATGGT GGCCTCCTGC
GGTGGTGACC TGCAGTCGCC AGACAATACC TGCCCCGATA AAACCGGGGA ACGGTCTGGT
CTGGATTTCA GTCCCTTTGC CGGAAAAATT AGCCTTATCA CCCCCAACAA GGCGGAACTT
TCCCGTCTTA TCGGCCGCTT ACTCAATGAT GACGATGCTC TGGAGTGGGC TGCCAACGTA
CTGTGGCAGG CCTTTGGCGG CAGCATTCTT GCCAAGGGAG GAGATTGCCC ATGGCAGCAG
TCTAAGGCCA GGGATCTGTT GCTGCTGGGT GATATTGCTA CCATTTCGCC GCTGCACAGG
CGTCAGGGAT TTTGGCTCAG CAATGAGCGG GTTGCGACTG TGCACAATCA CGGCAGCGGC
TGCACGCTTT CAAGTGCCAT AGCCGCCTTT GTCGCCAAGG GGTTGGTGCT GCCCGATGCG
GTGCTGCTGG CCAAAGCCTA TGTATTTGAG GGGCTCAGGC AGGCAAGCGC TGTAGGTTCT
GGCCCCGGGC CACTGGCCCG CACCGGCATG CCTGAGTCCC TGGCCGCTAT GGCATCGATT
CACCGATTAC ATGAAAGCCG CAGTCACAGG TTGCCAACCA AGGGGTTTAC CCGCCTGGGT
CATGATTTGG GCGTTTATCC CGTGGTGGCC GACATCGATA TGCTTGAAAC ACTGCTTGAG
GCAGGCGCCA ACCCAATTCA GCTGCGCATC AAGGGCGAGA TTGGCCCGGG TAGCGCGGCT
GAAGCGGACA TCATCCGCGC CATTGCCCTT GGCAGGCAGC ATCGGGCGCG CGTCTTTATT
AACGACCATT GGCGCCTTGC CATCAGCCAT GGTGCCTTTG GGGTGCATCT TGGGCAGGAG
GATATAGAGG CCGTGCCGCT GGATGCCATT GCTGAGGCTG GCATGGCCCT TGGGCTGTCG
AGTCACGGGT TGTTTGAGGC CTTGCTGGCC CTTGAGCTTA ACCCCAGCTA CCTCGCCCTT
GGGCATATTT TTCCCACTAC CACCAAGGAA ATGCCTTCCA AACCACAGGG GCTGGAGACG
CTGGCACTTC TTGCGAAGAT TGTCAGTACA GCTGTGCCAA CGGTGGCGAT TGGCGGTATA
GAGGCGGGTA ATTTGCCTGA GGTCGCTGCT ACAGGCGTGG ACAGCATTGC CGTGGTACGT
GCTGTGACCG AAGCAAGCGA ACCGGCGACT GCCTTTCGCG CACTCGCTGA CGCCTGGGAG
ATGCGGAATG CTCGCTGA
|
|---|
| Protein sequence | MAKINDMAAK PIVWTIAGSD SGGGAGIQAD LLTLQDLGCY GCSVITAITA QNSVAVTAVE
PVTPRMLRAQ LETLKADLYP SAVKIGLIAN QPQLDFLADW LGENLPGVPV ILDPVMVASC
GGDLQSPDNT CPDKTGERSG LDFSPFAGKI SLITPNKAEL SRLIGRLLND DDALEWAANV
LWQAFGGSIL AKGGDCPWQQ SKARDLLLLG DIATISPLHR RQGFWLSNER VATVHNHGSG
CTLSSAIAAF VAKGLVLPDA VLLAKAYVFE GLRQASAVGS GPGPLARTGM PESLAAMASI
HRLHESRSHR LPTKGFTRLG HDLGVYPVVA DIDMLETLLE AGANPIQLRI KGEIGPGSAA
EADIIRAIAL GRQHRARVFI NDHWRLAISH GAFGVHLGQE DIEAVPLDAI AEAGMALGLS
SHGLFEALLA LELNPSYLAL GHIFPTTTKE MPSKPQGLET LALLAKIVST AVPTVAIGGI
EAGNLPEVAA TGVDSIAVVR AVTEASEPAT AFRALADAWE MRNAR
|
|---|
| |