| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1844 |
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| Symbol | |
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| ID | 4604094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2245344 |
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| End bp | 2248142 |
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| Gene Length | 2799 bp |
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| Protein Length | 932 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781220 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_927719 |
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| Protein GI | 119774979 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.192206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGCTTA TTCTGAGACT GTTTTTTTTC CTTAGCCTCT TGTTGCCCTC TGTGCTTCAT
GCCAGTGAAA AGCCACTGGT GTTGGTGATG GGAGAAGACA GCTATCCATT TCAGTTCCTT
GATGATGATG GCGAACCACA GGGATTACTG GTGGAGTTGT GGAAAGAGTG GTCGAGGGTC
AATCGTCGTC CGGTGGTATT TGTCGGGAGG GTGTGGCGCG ATTCGGTTGC CCAGTTGGAA
GACGGGCGCG CCGATGTCCA TTTGGGCATG GCTATCAATC CTGAACGCGA AGCCAGGTTT
GCATTTGCAA ACGCCATTTC TGACGTTAAC ACCTACGTCT ACCTGCATAA GCAGTTGCAG
GGACGTACAA AACTTGAAGA ACTTCAACCC TTTCAAATCG GCATAGTACA GGGTTCTACC
TTTGAGCAGG AGCTCAGTAG CCGCCAGCCC GGTCTGGTGT TTCGCTATTT CCCTACCCGC
GATAGCCTCC TTGAAGCCGC ATACCGGGGA GAGCTTGTTG CGTTTGCCGG GATGGAAGGC
TACATGCGCG ACCAGGCGTT GCAGCAGAAA CTCGCGGCTG AGTTTCCCAT TAATACACGG
GTATTGGTTC GGGAGACCAA ACTTCATCCA GCGGTCAGAA AGGGCAACAA TGCGCTTATC
CGGGAGATAA ACGAAGGCTT TGCCAATGTC GCCGATGATT TTATTCGCAA GCTAGAGCGT
CGCTGGCTGG GGTATCAGCG TCAGCAAAGT GGTCTCGCCA TTGCCATGCA ACTGGGGGTT
GAGCCCTTTG TAGACCTGGG GGGCGATGGT CAGCCCCACG GCCTCTACGT TGATATCTGG
CGGCTGTGGT CAGAAAAAAC CGGGATCCCC ATTAACTTCA TCCCCGGCGA TATGAATGGC
AGTCTGGAGG ATGTGCGTTC GGGGCGTGCC GATGTGCATA TCGGCTATCC GGAGAGTGAC
GATATGAATA CCGGGCTCTA CCGCGCCTGG CATATGTACA CCATCAAGAG CCGTTTATTT
TTGTACGGCG ATCAAAGTCA TGACCTGGAT GCCCTAAAGG GCAAACGTCT TGGGGTATTT
CCGACTGCAC CTTATGTGGC AGCGCTCAAG GCTGCCTTAC CCAACACCCA GATCCGTTTC
TATCAGGGTA TGGACGAAAT GCTCACCGCT GTGCATCAGG GGGATATTGT CGGTTTTGTG
GCGGCCGCCG CCTGGACCCA ACATTACTTG TTGCTCAATC GCAGCTGGTC AGAATTTCAT
CAGGTGCCTT CCCTTGAGTT TGACACCGAA ATTTATGCGC TGATCCGTCA GGGAGATCAG
GGGCTTGCCA ATCGTATTGC CTCTGGATTC AACATGATTG ATTGGAAAGA GCTGGCGGAC
ATTGAGCAAA AATGGATGCT CAACAGCCGC GACCATGTGT TTTTGAAAAG CAAAGAACAC
ATAGAGCTCA CGGATAACCA ACGGCGCTAT CTTGATGGAC TTGGCACCTT GCGTATGGGG
TTTCTTGAAA ACTGGGGGCC CATGGAGTTT GTTGATGAGC AGGGTAACTT TGCCGGCGTT
AATGCCGACA TTGCCCAGAT GATGGAAGCC ATGTTGGGCA TTGAAATTCA ACCCGTGCCA
TTCAAGGAAT GGAGCGATCT GATAAGCGCC CTGGCAAAAG GCAACATAGA TTTAGCGGGC
AGCGTGGCCA AAACCGCCGA GCGGGAAGGG CAAATGGGAT ACTCAGAACC CTACTGGCCC
TCGGCCTGGG CTTTGGTTAG CCCACTGGAA AGCGTCACCG TATTCAACCT TGAACAGCTC
GAAGGTCAGC GTTTGGCGGT TGTAGAGGGA TACCAGATTA TCAGCCGTTT GATGGCAGAA
TACCCCGGCA TCAAGCTGGT ATTGGTGCCG GACAGTCAAT CCGGGTTGCA AACGGTTGCA
TCCGGTAAGG CCGATGTGTT CCTTGAAAAG GTGGTAACAG TCGCAAGCCA ACTGGGCGCA
GGCCAGTATC AGCAGCTGAA GATGTCGCTG CTGGCAGATT TTGCCGATCA GAAGAGCCAC
ATAGCCGTAT CAGCCAAACA CTCGGAACTT CTGCCTTTTA TCAATCGGGT CATTGCCAAA
CTGGACAAAG CCAGGGTGCA GGAAATCTAT AGCCGGTGGG TGGACATTAA GCTCGACACC
GGCTTGGTGC GTTATCAGCG CTATATGAAG GGCGTGGCGA TAGCCTTGGC ACTGCTGACA
CTCTTGGTGC TGGTCATTAC CGTGATTAAC CGGCGCCTTA AAGGCGAAAT TCAGGCCAGA
AAAGAGGCCG AATCGCGCAT TGCCCATCTG GCGAGCCACG ACCCGCTAAC CGGGTTGCCA
AACCGTATGT TGCTTGATGA CCGTCTTAAA CAGGCAACCT TGTTCCATTG CCGTGAGCAG
AGTAAATTTG CACTGTTGTT TGTCGATCTG GATGGCTTTA AAGAAATCAA CGATAGCGAG
GGGCATGTCA CAGGGGATGC GGCGCTGGTT AAGGTGGCGA ACTTGCTGGA CGAGGCTGTC
AGAAAGTCCG ACACAGTGGC GCGCTTCGGC GGCGATGAGT TTGTGGTATT GCTCAATAGA
ATTCACGACC TGGACAGCGT CTGTCAGGTG GCTGAAACCC TGATTGCCCG CATTGGCGAG
CCGCTGAACA TCGGCAAAAA GACCCTGAAA CTGTCGGCCA GTATCGGTAT CGCCATTTTC
CCGTCCGATA GCGACAACCC CATAGGCCTG ATGCAAAAAG CCGACAAAAT GATGTATTTC
GCCAAACAGG CGGGAGGTAA TGGTTATCGC AGTGCCTGA
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| Protein sequence | MKLILRLFFF LSLLLPSVLH ASEKPLVLVM GEDSYPFQFL DDDGEPQGLL VELWKEWSRV
NRRPVVFVGR VWRDSVAQLE DGRADVHLGM AINPEREARF AFANAISDVN TYVYLHKQLQ
GRTKLEELQP FQIGIVQGST FEQELSSRQP GLVFRYFPTR DSLLEAAYRG ELVAFAGMEG
YMRDQALQQK LAAEFPINTR VLVRETKLHP AVRKGNNALI REINEGFANV ADDFIRKLER
RWLGYQRQQS GLAIAMQLGV EPFVDLGGDG QPHGLYVDIW RLWSEKTGIP INFIPGDMNG
SLEDVRSGRA DVHIGYPESD DMNTGLYRAW HMYTIKSRLF LYGDQSHDLD ALKGKRLGVF
PTAPYVAALK AALPNTQIRF YQGMDEMLTA VHQGDIVGFV AAAAWTQHYL LLNRSWSEFH
QVPSLEFDTE IYALIRQGDQ GLANRIASGF NMIDWKELAD IEQKWMLNSR DHVFLKSKEH
IELTDNQRRY LDGLGTLRMG FLENWGPMEF VDEQGNFAGV NADIAQMMEA MLGIEIQPVP
FKEWSDLISA LAKGNIDLAG SVAKTAEREG QMGYSEPYWP SAWALVSPLE SVTVFNLEQL
EGQRLAVVEG YQIISRLMAE YPGIKLVLVP DSQSGLQTVA SGKADVFLEK VVTVASQLGA
GQYQQLKMSL LADFADQKSH IAVSAKHSEL LPFINRVIAK LDKARVQEIY SRWVDIKLDT
GLVRYQRYMK GVAIALALLT LLVLVITVIN RRLKGEIQAR KEAESRIAHL ASHDPLTGLP
NRMLLDDRLK QATLFHCREQ SKFALLFVDL DGFKEINDSE GHVTGDAALV KVANLLDEAV
RKSDTVARFG GDEFVVLLNR IHDLDSVCQV AETLIARIGE PLNIGKKTLK LSASIGIAIF
PSDSDNPIGL MQKADKMMYF AKQAGGNGYR SA
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