Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1843 |
Symbol | aspS |
ID | 4604093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2243378 |
End bp | 2245153 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639781219 |
Product | aspartyl-tRNA synthetase |
Protein accession | YP_927718 |
Protein GI | 119774978 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0173] Aspartyl-tRNA synthetase |
TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.986528 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.35056 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGCAGTC ATTATTGTGG AGACGTTAAT AAGTCTCACG TCGGACAAGA AGTCACCCTC GTTGGCTGGG TAAACCGCAG CCGCGATTTG GGGGGTGTGA TCTTTTTGGA TCTTCGCGAC CGCGAAGGTT TGGTTCAGGT AGTATATGAC CCGGACTTGC CAGACGTGTT TGACGTAGCC AGCAGCCTGC GTGCCGAGTT CTGTGTTCAG GTGAAAGGTG TGGTTCGCCC ACGTCCTGAC AGCCAGGTGA ACAGCCAGAT GAAAACCGGT GAAATTGAGG TGCTGGGTAA AGCGCTCACC ATCATCAATG CCGCCGACCC GCTGCCACTG AGCCTGGATA ACCACCAGAA CAACAGCGAA GAAGCCCGTC TGAAGTACCG CTATCTGGAT CTGCGCCGTC CTGAAATGGC ACAGCGTCTG ATTTTCCGTG CCAAGGTCAC CAGCTTTGTG CGTCGCTTTA TGGATGGCAA CGGCTTCCTC GACATTGAAA CCCCTATCCT GACCAAGGCC ACTCCGGAAG GTGCCCGCGA CTATCTGGTG CCAAGCCGTA CCTATAAAGG TCAGTTCTTC GCACTGCCAC AGTCGCCACA GCTGTTCAAA CAGCTGCTGA TGATGTCAGG TTTTGACCGT TACTATCAAA TCGTCAAGTG TTTCCGCGAC GAAGACCTGC GCGCCGACCG TCAGCCTGAA TTCACCCAAA TCGATATCGA AACCTCGTTC ATGACCTCAG ATCAGGTGAT GGAAACCACC GAGCGTATGA TCCGTAACCT GTTCCTCGAG CTGATGAACG TGGATCTGGG TGATTTCCCG AAAATGACCT GGGATGAAGC CATGCGCCGC TTTGGCTCCG ACAAACCTGA TCTACGTAAC CCGCTGGAAC TGGTTGATGT AGCCGATCTG CTTAAAGCCG TTGAGTTTGC GGTATTCTCC GGCCCTGCCA ACGATGAAGA AGGCCGCGTT GCTGCCCTGC GTATCCCCGG CGGCGCCGAG CTGTCACGCA AGCAAATCGA CGACTACACC AAGTTTGTAG GAATCTACGG TGCCCGCGGT CTGGCCTGGA TGAAGGTCAA CAACCTGGCT GCTGGCGTTG AAGGCATTCA GTCACCTGTG GCTAAGTTCC TGAATGAAGA CATCATCAAG GAAATCATTG CCCGCACCAA GGCTGCCGAT GGCGATATCA TCTTCTTCGG TGCTGACAAG GCCAACGTGG TTGCCGAGTC CATGGGCGCC CTGCGTCTGA AAGCCGGCGA AGACTTCAAA CTGCTCGAAG GTGAGTGGCG CCCACTGTGG GTGGTTGACT TCCCGATGTT CGAAAAGGCC GATGGCCGTT TCTACGCAGT TCACCATCCC TTTACCGCGC CGCGCGGCGT CACTGCTGCC GAGCTTGAAG CGAGCCCAGG CAAGGCCGTG TCCGATGCCT ACGACATGGT ACTCAACGGC GTTGAGCTGG GCGGCGGCTC TGTGCGTATC CACAATGGCG ACATGCAGTC TACCGTGTTC CGTATCCTTG GCATCGACGA TGAAGAAGCC AAAGAAAAGT TCGGCTTCCT GCTGGACGCA CTGCGTTTCG GTACCCCACC ACACGCGGGT CTGGCCTTTG GTCTGGACCG TCTGGTGATG CTGATGACCG GCGCCAGCTC CATCCGTGAT GTGATGGCCT TCCCCAAGAC CACCACGGCG GCCTGTCCGC TCACCAACGC GCCGGGACAT GCCAACCCCG ACCAACTGGT GGAACTGGGC ATTGCGGTTC TGCCGAAAGA GCCGAAACAA GACTGA
|
Protein sequence | MRSHYCGDVN KSHVGQEVTL VGWVNRSRDL GGVIFLDLRD REGLVQVVYD PDLPDVFDVA SSLRAEFCVQ VKGVVRPRPD SQVNSQMKTG EIEVLGKALT IINAADPLPL SLDNHQNNSE EARLKYRYLD LRRPEMAQRL IFRAKVTSFV RRFMDGNGFL DIETPILTKA TPEGARDYLV PSRTYKGQFF ALPQSPQLFK QLLMMSGFDR YYQIVKCFRD EDLRADRQPE FTQIDIETSF MTSDQVMETT ERMIRNLFLE LMNVDLGDFP KMTWDEAMRR FGSDKPDLRN PLELVDVADL LKAVEFAVFS GPANDEEGRV AALRIPGGAE LSRKQIDDYT KFVGIYGARG LAWMKVNNLA AGVEGIQSPV AKFLNEDIIK EIIARTKAAD GDIIFFGADK ANVVAESMGA LRLKAGEDFK LLEGEWRPLW VVDFPMFEKA DGRFYAVHHP FTAPRGVTAA ELEASPGKAV SDAYDMVLNG VELGGGSVRI HNGDMQSTVF RILGIDDEEA KEKFGFLLDA LRFGTPPHAG LAFGLDRLVM LMTGASSIRD VMAFPKTTTA ACPLTNAPGH ANPDQLVELG IAVLPKEPKQ D
|
| |