| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1838 |
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| Symbol | |
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| ID | 4604088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2237370 |
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| End bp | 2239889 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781214 |
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| Product | TonB-dependent receptor, putative |
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| Protein accession | YP_927713 |
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| Protein GI | 119774973 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000660835 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0669762 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAAA CCACGAGAAT CGCCTGGGCG GTCAATTGTG TTCTGTTGGC TACCAGTGCT
TCTGCTGTCG TGTCCAGTCA GGCGTTTGCC GAAGAAGCTC AAGCCAAAGA CGTAGAGCGT
ATCGCAGTAA CAGGTTCACG TATCCAGCGC CAGGATATGG AAACTGCTTC TCCTGTCACA
GTGATCAGTG CCGATGCCAT TCGCGCTGAA GGCTTCACCT CTGTTGACCA AATGCTGCAG
GCTCAAACCT CCATGGCGGG TGCCGCTGTG GGTTCAAGCA CCAACAACGG TGCAGATGGT
GTAGCGCAGG TTGACCTGCG TGGTATGGGC GCTGAGCGTA CTCTGGTACT GCTGAACGGT
CGCCGCATGG TGAACTCAGG TTCAGGCGCT GACAGCGCTG TGGATTTGAA CTCTATCCCG
GTTGCCATGA TTGCCCGTGT AGAAATCCTG AAAGACGGTG CATCTGCAGT GTATGGCTCT
GACGCCATCG CCGGTGTGGT GAACATCATC ACCAAGAAAG ATTTTGAAGG CTTCCAGTTC
GACTTTAACG GCAGCGGCAC CGACAAGGGT GACGGCGAAA GTGGCGAACT GAGCATGCTC
TACGGTTTCA ACACCGATAA CGGTGGCAAC TACACCTTTG GTGCGGCTTA CTCTGAGCGC
CGTGGTGTTA TCCAGGCCGA TCGTGACTGG ACCGAGGCAG GTTACAGCTC ATTCATTCCT
ACCGGCTCTC TGGAAGGTAT GGTGAAAGAC GCCAACGGTA ATTGGGTTGA CCGTAACACA
GGTTATGACT TCACCCAGGA CAGCTGGTAT CAGACCCCAG CCAAGCGTTA CAGCCTGTTT
GCCAACATGA CTCAGGAACT GGGTGACGAT CTGCTGCTGA CCGGTGACAT CCTGTATACC
AAGCGTAAAT CTGATCAGCA AATGGCCGCT CAGCCAGCCG ACATCATGCT GGGCGTATGT
GGTGAAGAGG GTATCGATGC TGCACGTTGC ATCACTCTGG ATGGCGACAT GATTGCTGCC
GGTATCGCTC CTGATGACAC TGGCCGTGTA AACTACCGTC GCCGTACCAC CGATGTGGGT
CCACGTATCT ACAATCAGGA CACCGACACT CTGCGCGCCT CTCTGGGCCT GCAAGGTTCT
CTGGACATCA ACACAGGCAT GACCTGGGAC CTGTCTTACA CCTATGGTAA GAACAAGGCC
GAGACCTGGG TTGAAAACTC TATCAATGCC GTGAAGATGG AAAACTCCGT CTATAACAAC
CTGGACTCAT GGCTCAGCGG TCAGCCTCTG ACTCAGGACA TCATCAACGA CATCGGTTTC
ACCGAGCGTA ACGATGGCGG TAACGAGCAG CACGTGGTTG CCGGCGTACT GAGCGGTGAA
CTGTTTGATT TGAGTGCAGG TGCAGTTGGT TTTGCAATCG GTGCTGAATA CCGTTACGAC
AGTGGCTACT ACAATCCTGA TCCTGTGATT GTGGCCGGTG AGGGTACTGC GGCTCAGCAA
GACCCAACTG ATGGTAACTA CGATGTATTC TCCATCTATC AGGAAGTCAG CGTGCCTTTC
ACCGAGAAAC TGACCGGTGA ATTCGCCCTG CGTTTCGATG ACTACTCTAC CTTCGGTAAA
GCCTCGACCT GGAAAGTGGG TCTGACCTAT GAAGCCACTG ACGATCTGAT GCTGCGTACC
GTAGCTGCTA CCGGTTTCCG TGCACCTAAC GTTGCCGAGC TGTTTGGTGG TAACACAGGT
TCTTACGATT ATCTGGACGA TCCATGGGGT AACGAGCAAG ATCCTCAAAT TCTGGTGAAC
TACACCTCAG ATCCTGATCT GAAGCCAGAA GAGTCTGAGT CTTACACTGC CGGTCTGGTG
TACTCTCCAA GCTACATCGA CGGTCTGTCT CTGACCCTCG ATTACTGGCG TTTCCGTGTG
ACCAACGCCA TTACCCGTCT GGATGCCCAG AAGGGTCTGG TTGACTGTCA TGCCGGTATT
CTGAGCGCCT GTGAAACCTT CAAGATCACC GATGAAGGCG ATCTGTCGAA CTTCACCAAC
CCGCTGACCA ACGTGGGTAG CCAGAACACC AGTGGTATCG ACTTCAACCT GGCCTACAAC
TTCGAAGCTC TGAATCTGGA CTGGAAGATC AATAACGATC TGACCTACCT GCTGGAATTC
GAACAGGACA ACGTAGCCTA CGAAGGCACC AGCGATGGTA ACTTCGGTGG TTATGCCAAG
GTGCGCAACA ACTTCAGCAT CCAGGCCGGT CAGGCCGACT GGAGCCTGAT GTACTACAAC
CGTTTCATCG GCGAAACCGA GTGGTTGGGT GACCGTGATG AAACTGTAGA CTCAGTGCTG
TACCACAACG TGGTTGCCAC TTACTTCATC AACGACGGCG TGACCGTATC TCTGGGTGTG
AAGAACCTCA CTGATGAAGA GCCATCCTAC GTGCCTAACG GCAGCGACGG CGGTACCATT
CCTGAAGTAT TTGACACCAT CGGTCGTCAA ATCTACGGTG GTCTGACGAT GAAGTTCTGA
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| Protein sequence | MLKTTRIAWA VNCVLLATSA SAVVSSQAFA EEAQAKDVER IAVTGSRIQR QDMETASPVT
VISADAIRAE GFTSVDQMLQ AQTSMAGAAV GSSTNNGADG VAQVDLRGMG AERTLVLLNG
RRMVNSGSGA DSAVDLNSIP VAMIARVEIL KDGASAVYGS DAIAGVVNII TKKDFEGFQF
DFNGSGTDKG DGESGELSML YGFNTDNGGN YTFGAAYSER RGVIQADRDW TEAGYSSFIP
TGSLEGMVKD ANGNWVDRNT GYDFTQDSWY QTPAKRYSLF ANMTQELGDD LLLTGDILYT
KRKSDQQMAA QPADIMLGVC GEEGIDAARC ITLDGDMIAA GIAPDDTGRV NYRRRTTDVG
PRIYNQDTDT LRASLGLQGS LDINTGMTWD LSYTYGKNKA ETWVENSINA VKMENSVYNN
LDSWLSGQPL TQDIINDIGF TERNDGGNEQ HVVAGVLSGE LFDLSAGAVG FAIGAEYRYD
SGYYNPDPVI VAGEGTAAQQ DPTDGNYDVF SIYQEVSVPF TEKLTGEFAL RFDDYSTFGK
ASTWKVGLTY EATDDLMLRT VAATGFRAPN VAELFGGNTG SYDYLDDPWG NEQDPQILVN
YTSDPDLKPE ESESYTAGLV YSPSYIDGLS LTLDYWRFRV TNAITRLDAQ KGLVDCHAGI
LSACETFKIT DEGDLSNFTN PLTNVGSQNT SGIDFNLAYN FEALNLDWKI NNDLTYLLEF
EQDNVAYEGT SDGNFGGYAK VRNNFSIQAG QADWSLMYYN RFIGETEWLG DRDETVDSVL
YHNVVATYFI NDGVTVSLGV KNLTDEEPSY VPNGSDGGTI PEVFDTIGRQ IYGGLTMKF
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