Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1833 |
Symbol | rnfD |
ID | 4604083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2233471 |
End bp | 2234517 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639781209 |
Product | electron transport complex protein RnfD |
Protein accession | YP_927708 |
Protein GI | 119774968 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.457327 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.122422 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTCA AGATTGCATC CTCACCCCAT GTCCGCAAAG ACAGCCAAAC CTCGGCTGTG ATGCAGCGCG TCATTCTTGC CGCCTTACCT GGCCTTGCCG TGCAATGCTA TTTCTTTGGT TGGGGCACCT TTATTCAGGT GTGTGTTGCC ATCGCGACGG CACTTGCCGC CGAGGCACTG GTATTGAAGC TTAGAAACCG CCCGATATCA CCTACCTTGA TGGATCAGAG TGCTGTGCTG ACCGCTCTCC TGATTGGTGT CGCCATTCCA CCGCTGGCAC CCTGGTATTT GGTAGTCATA GGCACGGTAT TCGCCATCGT GATGGTCAAA CAGCTTTATG GCGGTTTGGG GCAAAACCTC TTTAACCCTG CTATGGCCGC CTATGTATTG CTTCTGGTGT CTTTCCCGGT TCTGATGACG ACCTGGGCTG CCCCCAGTAC CCTGGCACAA AGCAGTGCTG GTATCCTGGA TGCCATTGAC GTGATTTTTT CAGCCCAGGG CGCAGCAGAT TTTGCGCTGG GAATTGATGG CGTCTCCATG GCGACACCAC TGGACACCTT GAAAACCGAT CTTTCCATGG GGCTTACCGC AGATGAAAGT CTGAAACGCG CCATCTTCGG TGGCGGCAGC ACCGGTGAAG GCTGGTTCTG GGTGAACCTC GCTTATCTGT GTGGCGGTTT GTTTTTGCTC GCCACCAAGA CCATCCGCTG GCACATCAGC GGTGGGCTCA TCGGCGCCCT TTTTGTGTGC AGTCTCTTTG GCTTTGGCGC CTCGCCAGAC ACCCACGCCA GCCCCCTGTT TAACCTCTTC AGCGGCGCTA CCATGCTGGC TGCCTTTTTT ATCGCCACCG ACCCGGTTAC CGCAGCCACC AGTCCTCGCG GGCGGCTGCT CTTTGGGGCC ATGATAGGGG TGCTGATTTA TCTTATTCGC ACCTTTGGTG GTTACCCCGA TGGTGTGGCG TTCGCGGTAT TGCTGGCTAA CCTCTGCGCT CCACTAATCG ACTATTACAT CAAGCCACGG GCCTATGGCC ACCGTGGCAG CCTGTAG
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Protein sequence | MAFKIASSPH VRKDSQTSAV MQRVILAALP GLAVQCYFFG WGTFIQVCVA IATALAAEAL VLKLRNRPIS PTLMDQSAVL TALLIGVAIP PLAPWYLVVI GTVFAIVMVK QLYGGLGQNL FNPAMAAYVL LLVSFPVLMT TWAAPSTLAQ SSAGILDAID VIFSAQGAAD FALGIDGVSM ATPLDTLKTD LSMGLTADES LKRAIFGGGS TGEGWFWVNL AYLCGGLFLL ATKTIRWHIS GGLIGALFVC SLFGFGASPD THASPLFNLF SGATMLAAFF IATDPVTAAT SPRGRLLFGA MIGVLIYLIR TFGGYPDGVA FAVLLANLCA PLIDYYIKPR AYGHRGSL
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