| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1832 |
|---|
| Symbol | |
|---|
| ID | 4604082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2230826 |
|---|
| End bp | 2233468 |
|---|
| Gene Length | 2643 bp |
|---|
| Protein Length | 880 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781208 |
|---|
| Product | electron transport complex protein RnfC |
|---|
| Protein accession | YP_927707 |
|---|
| Protein GI | 119774967 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
|---|
| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0828396 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGACGC TTTTGGAACA ATTGGATAAA GGTACGCTGT GGCGCTCACC CGGTGGCATT
CACCCACCCG AGATGAAATC CGTCTCCAAT GGCACCGCTA TCGCCACACT GCCACTGTTT
GATGAGTACC TGGTACCCCT GCCTCAGGTC GGTGAACAGG CCATTCTCGC CGTAAAAGTG
GGAGATACTG TACTTAAAGG GCAGATGCTG ACTCAGGGCC AGGGAGTTGG CTATCTACCG
GTACATGCCC CCACCTCAGG CCGCGTCAAA GCCATTGAAT CACGCCCGAG CAACCATGCC
TCTGCGCTGC CCATACTGAC CCTGGCATTG GAAGCCGATG GCCAGGACAA ATGGTGTGAA
CTCCAAAGCG CGGCTTTGGA TGCGTTGACC CCTGCCCAAA TGGTCAAAAG GATACAGGAT
GCCGGCATCG CCGGTATGGG CGGCGCTGCG TTTCCAAGCC ACATTAAATT AAGTCCGGCG
AGCGAAATTG AGCTGGTGAT AGTCAATGGC GTTGAATGTG AACCCTACAT TACCGCTGAC
GATCGCCTTA TGCGCGAGCA CGCCGATGGG ATAGTCGCTG GTATCGGTAT AGTGCACCGT
ATCCTTGCAC CCAAACGCAT TATCATCGCC ATCGAAGACA ACAAGCCCGA AGCCGCTGAA
GCCATGCAGG CTGCCGTCAA TCGCAGCCAG TTACCGGCAG GACTTGTCAG GGTCACTGTT
ATCCCGACCA AATACCCTTC AGGCGGTGAA AAGCAGCTCA TTCAGATAGT GACTGGCCAG
GAAGTGCCCT CCGGCGCTAT TCCTGCGCAG CTCGGTATCC TGGTGCACAA CGTCGGTACC
CTGTTTGCAA TCCGGGATGC CGTCATCGAA GGTAAGCCAC TGATAGAAAG AGTCGTCACT
GTCACCGGCA ATGCAGTAAC CAAACCCGGG AACTACTGGA CTTTAATAGG CAGCAAGGTA
GAGGATGTCC TCCGCCACTG TGATTTTCGT GAAGCAGAGG CCCAAAAAAT CATCATGGGT
GGCCCCATGA TGGGATATAC CCTGGCCAAT ACCCAGGTAC CGATTTTGAA AGGCAGCAAT
TGTCTGCTGC TGCCCAACGG CCTCGAAATC ACCGAGATGC CGCCTGAAAA ACCCTGCATT
CGCTGCGGCG AATGTGCCGT TGCCTGCCCT GCGTCCTTGC TGCCGCAGCA ACTCTTTTGG
CACGCCAAGG CGGAAGAATA CGACAAGGCA CAAAGCTATA ACCTTAAAGA CTGTATCGAG
TGCGGATGTT GCACTTATGT CTGCCCCAGC GATATCCCGC TGGTAGAGTA TTATCGGGTG
GCCAAAGCCG CCATTCGCCA GCAGGCGGAA GAAAAAGCCA GTGCTGAGCG TGCCAAGGTG
CGATTTGAAG CGCGCATTAC CCGCCTTGAA GAAGAAAAAG CGGCCCGTGA AGCCAAGGCA
AAAGAGGCGG CGGAAAAACG TAAAGCGGCC ATGGCCGGTG GAGAAAAAGA CGCCATCGCT
GCCGCCCTCG CCCGGGTACA GGCCAAAAAA GCCGCCCAGG AACAAAATGC CGCTCCGGTC
GCTGCCTCAC CAGAGGGGGC TCAAGCTTCA GCGGCGGATC CAAAAGCCGG GGTTGCTGCC
GCCATCGCCA GAGCCAAAGC CAAAAAGACA GCCCAACAGG AAGCAGCCAA GTCCCCCGAT
ACAGCGGGCA GCACTGTGAC CGATGCTGCT TCAGACCTGT CTATCGAGAC GACGCCTGAG
CAGGAGTCAA CGCCCGCAAG CAGTGAAGAT CCGAAAAAGG CCGCTGTTGC CGCAGCGATT
GCCCGCGCCA AGGCAAAAAA GGCAGCGCAG GCGGCAAACA GCAATACAGC GGCTACAGAC
ACCGCTAACG GTAATCGCCA GGTATCCTCC TTACAGGAGC CAAAAGTTCA GGCATCAGCA
GTACAGCCAC CTGAATCACA GGCGCAGGAG CAGGATCCCA AGCGAGCTGC TGTGGCAGCC
GCCATCGCCA AAGCGAAAGC CAAAAAGTCT GCCCGGAATA CGGATGAAAG CGGCTTGGCT
GTGGCAGAAC CGTCCGCACC AGCGACCGGG GAGGCAGAAT CAGCCCCAGC GGATGACAAA
TCAGCAAGAG TTGCCGCAGC GGTTGCCAAA GCCAAGGCGA AGAAGTTGGC GGCAAGTGCT
TCTGACAGCC CATTCCCAGA GGATATGGCC GCTATTCCTG AAAAGAATCG CAGTGAGGCA
AGCCTCGTAC AAACAGATGA AAGTCTTCCT GAGACCAGGG GAGACGATAA GCCTGACAAC
AAAGCCGCCA GAGTGGCCGC TGCGGTTGCC AAAGCCAAGG CAAAGGCTGC GGCCAGACGT
GAAGAGGCAC AGCCGGATCC AGCTGTGGCT GAACACATTC AATCTGAAAC GTCTCAAGCG
GCCGACGCCG ATGAACTTGA GACTGACATT CAGGCACCAG AGAAAAGTAC CTTAACCGAC
ATGGCCACGG CCATGCCGCC TGCAGCAAAC CAAATACCAG AGCAAGGTGT TCACATCGCA
GACAGCGCAA ACACTGCTGC TTCAGAGGTT CCACCAACCG ATGCCGATAC GCTCAAAAAA
GCCCGTATTG CTGCGGCTGT CGCCAAAGCC AAGGCAAAAA AAGCCGCCAA GGAGCATGAA
TAA
|
|---|
| Protein sequence | MLTLLEQLDK GTLWRSPGGI HPPEMKSVSN GTAIATLPLF DEYLVPLPQV GEQAILAVKV
GDTVLKGQML TQGQGVGYLP VHAPTSGRVK AIESRPSNHA SALPILTLAL EADGQDKWCE
LQSAALDALT PAQMVKRIQD AGIAGMGGAA FPSHIKLSPA SEIELVIVNG VECEPYITAD
DRLMREHADG IVAGIGIVHR ILAPKRIIIA IEDNKPEAAE AMQAAVNRSQ LPAGLVRVTV
IPTKYPSGGE KQLIQIVTGQ EVPSGAIPAQ LGILVHNVGT LFAIRDAVIE GKPLIERVVT
VTGNAVTKPG NYWTLIGSKV EDVLRHCDFR EAEAQKIIMG GPMMGYTLAN TQVPILKGSN
CLLLPNGLEI TEMPPEKPCI RCGECAVACP ASLLPQQLFW HAKAEEYDKA QSYNLKDCIE
CGCCTYVCPS DIPLVEYYRV AKAAIRQQAE EKASAERAKV RFEARITRLE EEKAAREAKA
KEAAEKRKAA MAGGEKDAIA AALARVQAKK AAQEQNAAPV AASPEGAQAS AADPKAGVAA
AIARAKAKKT AQQEAAKSPD TAGSTVTDAA SDLSIETTPE QESTPASSED PKKAAVAAAI
ARAKAKKAAQ AANSNTAATD TANGNRQVSS LQEPKVQASA VQPPESQAQE QDPKRAAVAA
AIAKAKAKKS ARNTDESGLA VAEPSAPATG EAESAPADDK SARVAAAVAK AKAKKLAASA
SDSPFPEDMA AIPEKNRSEA SLVQTDESLP ETRGDDKPDN KAARVAAAVA KAKAKAAARR
EEAQPDPAVA EHIQSETSQA ADADELETDI QAPEKSTLTD MATAMPPAAN QIPEQGVHIA
DSANTAASEV PPTDADTLKK ARIAAAVAKA KAKKAAKEHE
|
|---|
| |