| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1828 |
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| Symbol | |
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| ID | 4604078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2224267 |
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| End bp | 2226285 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781199 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_927703 |
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| Protein GI | 119774963 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00277406 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.439002 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTGAGC AAGTTTTTCA ACTTTCTTCC CACTATTCAC CCGCAGGTGA CCAGCCTACA
GCTATCGCCA AACTGATTGA TGGGCTTGAG TCAGGGCTCG CCTGTCAGAC TTTGCTCGGG
GTAACAGGCT CTGGCAAGAC CTTTACCGTG GCCAATGTTA TTGCCACCCT GGGGCGCCCG
ACCATTATCA TGGCGCCCAA TAAGACACTG GCGGCGCAGC TCTATGGGGA GATGAAAGAA
TTCTTTCCCA ATAATGCGGT GGAATACTTC GTTTCTTACT ATGACTACTA TCAGCCGGAA
GCCTATGTGC CGGCATCCAA TACCTTTATT GAGAAAGATG CCTCGGTAAA CGCCCATATC
GAACAAATGC GTCTGTCGGC GACCAAGGCC TTACTTGAAC GCCGTGATGT CATCATTGTC
GCGTCTGTGT CCGCGATTTA TGGTTTGGGT GATCCAGACT CTTATATGAA GATGTTGCTG
CATTTGCGCC AGGGTGACTT TATGGGCCAG CGCGACATCT TAAGACGCCT CAGTGAACTG
CAATACAGCC GTAACGACAT CGACTTGCAG CGGGGCACCT TTAGGGTGCG TGGAGAGGTC
ATTGATATCT TTCCGGCGGA TTCGGAGCGG GATGCCATCC GGGTTGAATT GTTCGACGAT
GAGATTGAGC GCATCAGCGA ATTTGACCCA CTCACGGGGC AGGTCACCAA ACGTCTGGCT
CGTGCCACCG TGTACCCAAA AACCCACTAT GTGACGCCGC GTGAGAAAAT CCTCGAAGCC
ATTGACCAGA TTAAAGACGA ACTGAGGGTG CGCAAACAGC AGTTTTTGGA TAACCACAAA
CTCATTGAAG CTCAGCGTAT TACCGAGCGG GTTCAGTATG ATGTGGAAAT GATGACAGAG
TTGGGATACT GCTCGGGGAT TGAAAACTAC TCCCGTTATC TGTCGGGCCG TGCCGAAGGG
GAAGGGCCGC CAACCCTGCT GGACTATCTG CCTGCCGATG GTCTGATGAT AATCGATGAA
TCCCACAACA CTGTGCCGCA GATTGGTGCC ATGTATAAGG GTGACCGCTC TCGTAAAACC
ACCCTGGTGG AGTATGGTTT CCGTTTGCCC TCGGCACTGG ATAACCGGCC CCTTAAGTTT
GAAGAGTTTG AATCCCTGAT GCCGCAGACG ATTTTCGTTT CGGCCACGCC CGGGAAGTAT
GAGCTGGAGA AAAGCGGGGA TGATATCGCC GAGCAGGTAG TGCGCCCTAC TGGTCTGATT
GACCCCGAGC TGGAAGTACG CCCGGTGGCC ATTCAGGTTG ACGACCTACT CTCAGAAGTT
GCCAAGCGGG TGGCAGTCAA TGAACGGGTG CTGGTGACCA CACTCACCAA GCGGATGGCA
GAAGATCTCA CCGATTACCT CGATGAACAC GGCGTTAAAG TGCGCTATCT GCACTCGGAT
ATTGATACCG TGGAGCGGAT GGAAATCATC CGCGATCTGC GGCTCGGGGT GTTCGATGTA
CTGGTAGGCA TTAACCTGCT CAGGGAAGGT CTCGACATGC CGGAAGTGTC TCTGGTGTGT
ATTCTCGATG CCGATAAAGA AGGCTTTTTG CGCTCCGAAC GTTCGCTTAT TCAGACCATA
GGCCGCGCAG CCCGTAACGT GAATGGCAAA GTGATTCTCT ACGCCGACCG TATTACTGAC
TCCATGGCCC GTGCCATGGC GGAAACGGAG CGGCGCCGCA CCAAGCAGAT GCAGTTCAAC
GAGGAGCACG GCATCATCCC CCGCGGCGTG GTGAAGAAAA TCACCGATGT GATGGACGTA
GGTGAGAGGT CTGCGCCAAG CCGCGGCGCC GTCAAGGCAT CAGGTCGAAG CAGGGATGTA
GGTAAACCGT CGATGAGGCA AGACCCGCAT CAGATTGCCG TAACCATAGA TGCGCTTGAA
AAACAGATGC ATCAGCACGC CCGGGATCTG GAATTTGAAC AGGCTGCTGC GCTTCGGGAT
GAAATCCATG GGCTACGCCA GCAGTTGCTG GAAGCTTGA
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| Protein sequence | MSEQVFQLSS HYSPAGDQPT AIAKLIDGLE SGLACQTLLG VTGSGKTFTV ANVIATLGRP
TIIMAPNKTL AAQLYGEMKE FFPNNAVEYF VSYYDYYQPE AYVPASNTFI EKDASVNAHI
EQMRLSATKA LLERRDVIIV ASVSAIYGLG DPDSYMKMLL HLRQGDFMGQ RDILRRLSEL
QYSRNDIDLQ RGTFRVRGEV IDIFPADSER DAIRVELFDD EIERISEFDP LTGQVTKRLA
RATVYPKTHY VTPREKILEA IDQIKDELRV RKQQFLDNHK LIEAQRITER VQYDVEMMTE
LGYCSGIENY SRYLSGRAEG EGPPTLLDYL PADGLMIIDE SHNTVPQIGA MYKGDRSRKT
TLVEYGFRLP SALDNRPLKF EEFESLMPQT IFVSATPGKY ELEKSGDDIA EQVVRPTGLI
DPELEVRPVA IQVDDLLSEV AKRVAVNERV LVTTLTKRMA EDLTDYLDEH GVKVRYLHSD
IDTVERMEII RDLRLGVFDV LVGINLLREG LDMPEVSLVC ILDADKEGFL RSERSLIQTI
GRAARNVNGK VILYADRITD SMARAMAETE RRRTKQMQFN EEHGIIPRGV VKKITDVMDV
GERSAPSRGA VKASGRSRDV GKPSMRQDPH QIAVTIDALE KQMHQHARDL EFEQAAALRD
EIHGLRQQLL EA
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