| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1824 |
|---|
| Symbol | |
|---|
| ID | 4605973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2220855 |
|---|
| End bp | 2221925 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781195 |
|---|
| Product | pyridoxal-5'-phosphate-dependent enzyme, beta subunit |
|---|
| Protein accession | YP_927699 |
|---|
| Protein GI | 119774959 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0031] Cysteine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.295513 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.994405 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTCC CCATTTGCAC TAATTGGGTA GCCAATGCCA TCGGCAAAAT TGAAGCCGAC
TTTCAGCGCA GCGCCGACAC CCACCTGATT AAGCTCGAAT TACCGATGCT CGACGGCATC
GATATCTATT TAAAAGACGA AAGCACCCAC CCCACCGGTA GCCTCAAACA TCGTCTGGCC
CGTTCATTGT TTCTGTACGC ACTTTGCAAT GGCTGGATTA AAGAAGGTAC GTCGGTCATC
GAGTCCTCAT CCGGCAGCAC TGCGGTGTCT GAGGCCTATT TTGCCCGCCT GCTCGGTTTA
CCCTTTATTG CGGTGATGCC AAAGAGCACC GCCAAGCGCA AAATCGAACA AATTGAGTTT
TACGGCGGAC GTTGCCATTT TGTTGAACAT TCCAGCGAGA TTTACGCCGA GTCAGAGAAA
CTCGCCAAAG AACTGGGTGG CCACTACATG GATCAGTTCA CCTACGCCGA ACGGGCCACC
GACTGGCGCG GCAACAACAA CATTGCCAAC GCTATTTTTG GCCAGATGGA GCGCGAACCC
CATCCCATCC CCAGCTGGAT TGTGATGAGT CCCGGCACCG GTGGCACCTC GGCGACCATA
GGTCGCTATA TCCGCTATCA GCGCCTCGCC ACTAAATTGC TGGTGGTCGA CCCGCAGCAC
TCGGTGTTTT ACGACTACTT CAAAACCGGT GACGCCGGTA TTACCTGTGA AAAAGGCAGC
TGTATTGAAG GCATTGGTCG CCCCAGGGTG GAGCCTTCCT TTATTCCAGG CGTGGTGGAT
GAGATGCTTA AAGTCGCGGA TGTGGACTCC ATCGCCACCA TGTATTGGCT CGAAGCCTTA
ATCGGCCGTA AAACCGGCCC CTCTACAGGC ACTAACCTCT ATGGCGCACT GAAACTGGCT
TCCCAAATGA AGGCCCGCGG CGAAACCGGC AGTATCGTTA CGCTTATCTG CGATCCGGGC
GAACGGTATC TGGATACCTA CTACAACAGC GACTGGGTAA GTTCGCACAT TGGCGATATC
ACGGCAGCAA GTACGGCGCT TGCCGCCTTC AGTGAAAGTG GCAAGCTGTG A
|
|---|
| Protein sequence | MSLPICTNWV ANAIGKIEAD FQRSADTHLI KLELPMLDGI DIYLKDESTH PTGSLKHRLA
RSLFLYALCN GWIKEGTSVI ESSSGSTAVS EAYFARLLGL PFIAVMPKST AKRKIEQIEF
YGGRCHFVEH SSEIYAESEK LAKELGGHYM DQFTYAERAT DWRGNNNIAN AIFGQMEREP
HPIPSWIVMS PGTGGTSATI GRYIRYQRLA TKLLVVDPQH SVFYDYFKTG DAGITCEKGS
CIEGIGRPRV EPSFIPGVVD EMLKVADVDS IATMYWLEAL IGRKTGPSTG TNLYGALKLA
SQMKARGETG SIVTLICDPG ERYLDTYYNS DWVSSHIGDI TAASTALAAF SESGKL
|
|---|
| |