| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1821 |
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| Symbol | |
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| ID | 4604071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2217047 |
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| End bp | 2219224 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781189 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_927696 |
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| Protein GI | 119774956 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.398823 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.493253 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAAGGC GTAAATATCA ATTTCTGGTC GATCAAATAG TTCACTCTGC TGCCAAGCAG
CAAGGTGACT TCGAAAAAAC CGCCGAACTG GCTACCGAGC TCCTGTGTCA AACACTGGGG
CTTTGTGACG CCAGCGTGTG GGCGTTTGAT GCACTGCTCT CCAGCCAATA TCAGGTTGCA
CACTTCGGCA AACACCGACT GGAACCCAGT GCCAGGCGCC CTGCTCAAAT CAGCGATTGT
CCACGTTATT TGAAAGAACT TGAAAGCAGA CGCCATATCG ATGCTTTTGA TGTGGCCAAT
GACCCAAGAC TCGTTGAGTT GGCGTCCTGC TACTTTACTC CCAATGGCGT CCATTCTGCC
CTCGAAGTGG CTATCCGGAT AAACGGTCAC ATTGAAGGTG TACTGAGCCT TGAGCGCAGC
ATAGGTGCGC GCTGGAGCGA CAGCGAGCTT CATATCGCAA GCCAGGTGGC AGATCAGCTG
GCATTGGCGC TGGCGACCCG TCATACCTAC GACAAAGAAG AAAAGCTCTC ACTGTTTAAG
AGTGCAGTGG AACAGTCTGA GCAGGTGTTC ATGCTGATTA ACCTGCACAC CGAAACCGTC
GAATACGTCA ATAAGGCACA CGGTGACATT ACCGGTGTAC CAAGAGAAAA GGTTATTGGC
CGCTCTCTAA GGCAACTGGA CTTTTTCACT CAGCACCCAC GGCTGGCAGA AGAAGTACTC
GGACGGGTGT TTCGTGGTCT CAGCGCCAAG GGAGAGGTTA AGCTCAAGCG CTATGATGGT
CGCGACTACT GGCTGAATTA TCAGGCAAGT CAGTTTGTTA CCGAGCGTGG TAATTATTAT
GTGCTGGTCA CTTGTGAAGA TAATTCCGAG CAGCACAACT ACCAACAGGA GCTAGAGCGC
CTTGCCTGGC GGTGTTCGTT AACCGGGCTC TACAACCGCC TCCATTTCAA TCGGGTACTC
GACCGCACTC AGCAGGGGCA ATTGCTACTG GTAGATTTGG TCGGTTTTAA ACGCTTCAAC
GATACCTATG GTCATGAGCA GGGCGATGCG CTGCTGATGG AGATTGCGCG GCGTTTGAGG
CATTTCTCTG ACATCAATAA GGCGACAGAA ATTGCCCGGG TCGGCAGCGA TGAATTTGCT
ATTTTGCTGC TTGGCGAAAA ACTCAGTGCC GAAGTCGAAT TTATCAGCAA TCGCCTTTAT
CAACATCTTT CAGCACCGGT GCAGATAGGC AGGGAACAGG TTGATCCCAA ACCGGCGCTG
GCCATTGTCG ATATCGCCTC GGTCAGCAAT CTGATTGCGC CGCTCACCTG TGCCGACATT
GCCGTGCAAT ATGCCAAGAA GAAGCAGGGT GCTGCGATTC AAATATTCAA TAACACGCTG
CTCAGCGCCT TTAAAGACGA TGCGCAGATT GAGCGTGACT TACACTCGGC CATTCGAGGA
CGGCAATTTG AGCTTTATTA TCAGCCGCTG CGCGATCTGC AAAACGATCG CTACACAGGT
GCAGAGGCTC TTATCCGCTG GCACCACCCT AAAAAAGGTG TGCTTTATCC CGGGGCGTTT
ATTGATATCG CCGAGCAATC GGGACTGATT ACTGCCATCG GCAGTTGGGT GCTGGAAGCG
GCTTGTCGGC AGCTCAACTT ATGGCAGCAT CACAATCTGG ACATCTCCAT GCACGTGAAC
GTGTCCGCGA GGCAGTTTTT CAGCGGTAAT CTCTATGAGC AGGTATGGCA GTTGCTTACC
CGTTATCGCC TCAAGCCCAA GACGCTGATT TTGGAAATTA CTGAAACCGA GTTGATGGAA
GATATCCGTT ATGCCACCAA CCTGTGTCAG GAACTCGCTG AACTCGGGGT GGGGCTTGCC
ATTGATGACT TTGGTACCGG TTACAGCTCA ATGCGGTATT TAAAACAGTT TCCCATCAGT
AAGATTAAAA TTGACCGCTC GTTTATCTCC GATCTCACTA TCAGCCGGGA AAGTCAGGAA
ATTGTAAGCG CCATTATCGC CATGGCGAAG GCCTTGAATC TGTCACTGAC CGCAGAAGGG
GTCGAAACCC CGGAACAAGA GGCGTTTTTA GCGGCCAACC TTTGCCATCA GGCACAGGGC
TTCCTCTATA GCCCGGCATT GCGTGAAGCA GAGTTCTCAA AATTTATCGG TCAGGACCGG
CTCATTACCG TGCATTAA
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| Protein sequence | MKRRKYQFLV DQIVHSAAKQ QGDFEKTAEL ATELLCQTLG LCDASVWAFD ALLSSQYQVA
HFGKHRLEPS ARRPAQISDC PRYLKELESR RHIDAFDVAN DPRLVELASC YFTPNGVHSA
LEVAIRINGH IEGVLSLERS IGARWSDSEL HIASQVADQL ALALATRHTY DKEEKLSLFK
SAVEQSEQVF MLINLHTETV EYVNKAHGDI TGVPREKVIG RSLRQLDFFT QHPRLAEEVL
GRVFRGLSAK GEVKLKRYDG RDYWLNYQAS QFVTERGNYY VLVTCEDNSE QHNYQQELER
LAWRCSLTGL YNRLHFNRVL DRTQQGQLLL VDLVGFKRFN DTYGHEQGDA LLMEIARRLR
HFSDINKATE IARVGSDEFA ILLLGEKLSA EVEFISNRLY QHLSAPVQIG REQVDPKPAL
AIVDIASVSN LIAPLTCADI AVQYAKKKQG AAIQIFNNTL LSAFKDDAQI ERDLHSAIRG
RQFELYYQPL RDLQNDRYTG AEALIRWHHP KKGVLYPGAF IDIAEQSGLI TAIGSWVLEA
ACRQLNLWQH HNLDISMHVN VSARQFFSGN LYEQVWQLLT RYRLKPKTLI LEITETELME
DIRYATNLCQ ELAELGVGLA IDDFGTGYSS MRYLKQFPIS KIKIDRSFIS DLTISRESQE
IVSAIIAMAK ALNLSLTAEG VETPEQEAFL AANLCHQAQG FLYSPALREA EFSKFIGQDR
LITVH
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