| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1806 |
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| Symbol | |
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| ID | 4605970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2198300 |
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| End bp | 2199739 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781174 |
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| Product | glyceraldehyde-3-phosphate dehydrogenase |
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| Protein accession | YP_927681 |
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| Protein GI | 119774941 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
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| TIGRFAM ID | [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000348985 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.577213 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCTG ATAAACACCT GCAAAGCTGG CAAGAAAGAT TTGAACTGGC CGAGGCCATG
CAACCTCTGC TGGGTAAACT GTATCGCAAC CAAGGTGTAG AAGTTGTTGT CTATGGCAAG
CCTCTGCTGA ACGCCTCTAC CATTGATATT ATCAAGGCTC ACCGTCTGGT GCGTCGCCAC
GTGGGTGACA AACTGCGTTT GCGCGAAAGC TTCCCCTTTA TTGAGGTGCT GAGCAAGCTG
GCAGTGAAGC AGTGTAAAGT TGATATCGGC AAACTCGCCG TTAACTACTG GCGTAACCAC
AGCGACGCCA GCGAAATAGA AGCCTATATG GCCTCAGAAC TTGCCAGCGC CATTGATCAC
GCTGATGAAG TAGAACCAAG AGACGTGGTT CTTTACGGTT TCGGTCGTAT TGGCCGTCTG
TTGGCGCGTC TGCTGATTGA ACGTACTGGC CGCAGCAACA AACTGCGTCT GCGTGCCATC
GTTATCCGTG GCGGCCGTGC TGGCGATCTG GAGAAGCGTG CAAGCCTGTT GCGCCGTGAT
TCAGTTCATG GTCCTTTCAA CGGTTCTGTT GAAATCGATG AAGAAAACAA TGCCTTGATT
GCCAACGGTA CCTACATCCA AATCATCTAT GCCAACGGCC CGGAAGAAGT GGATTACACC
AAGTATGGTA TTAAAGATGC GTTGGTTGTA GACAACACTG GTGTGTGGAA AGACGAAGCA
GGTCTTGGAC TGCACCTGAA GAGCCCAGGA GCTGCCAAGG TACTGCTCAC TGCGCCTGCC
AAAGGTAACA TCAAGAACAT CGTATTCGGT GTGAATGATA ACGATATTCT CGATGAAGAC
ACTATCGTCT CTGCCGCATC TTGCACCACC AACGCCATCA CCCCGGTGCT TAAGGCCATC
AACGATAAGT ACGGTATCGA AAACGGTCAT GTGGAAACCA TCCACTCATA TACCAACGAC
CAGAACCTGA TTGATAACTA CCATAAGGCC GATCGCCGTG GTCGCAGCGC CCCGCTGAAC
ATGGTTATCA CTGAAACCGG TGCTGCCAAG GCCGTTGCCA AGGCGCTGCC TGTGCTGGCT
GGTCGTTTGA CCGGTAACGC TATTCGTGTT CCGACGCCAA ACGTGTCAAT GGCCATTCTG
AGCCTGAACC TGAACAGCGA AACCAGCAAA GATGATATCA ACGACTATCT GCTGGACGTC
GCGTTGCATT CACCACTGCA AAACCAGATT GATTTCACCA ACTCCACTGA AATCGTGTCC
AGCGACCTGG TTGGCTCTCG TTACGCCGGT GTAGTGGACT CACAGGCCAC CATCGCTGAC
GGTAAGCGTG CCATTCTGTA TGTTTGGTAT GACAACGAGT TTGGTTACAG CTGCCAGGTA
GTAGGCGTGA TGCAGAAAAT GCTGGGTCTG AATCACCAGT CTCTGCCTCT GTCTGAATAA
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| Protein sequence | MSADKHLQSW QERFELAEAM QPLLGKLYRN QGVEVVVYGK PLLNASTIDI IKAHRLVRRH
VGDKLRLRES FPFIEVLSKL AVKQCKVDIG KLAVNYWRNH SDASEIEAYM ASELASAIDH
ADEVEPRDVV LYGFGRIGRL LARLLIERTG RSNKLRLRAI VIRGGRAGDL EKRASLLRRD
SVHGPFNGSV EIDEENNALI ANGTYIQIIY ANGPEEVDYT KYGIKDALVV DNTGVWKDEA
GLGLHLKSPG AAKVLLTAPA KGNIKNIVFG VNDNDILDED TIVSAASCTT NAITPVLKAI
NDKYGIENGH VETIHSYTND QNLIDNYHKA DRRGRSAPLN MVITETGAAK AVAKALPVLA
GRLTGNAIRV PTPNVSMAIL SLNLNSETSK DDINDYLLDV ALHSPLQNQI DFTNSTEIVS
SDLVGSRYAG VVDSQATIAD GKRAILYVWY DNEFGYSCQV VGVMQKMLGL NHQSLPLSE
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