| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1784 |
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| Symbol | |
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| ID | 4604034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2175843 |
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| End bp | 2177144 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781150 |
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| Product | inner membrane transport protein YdhC |
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| Protein accession | YP_927659 |
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| Protein GI | 119774919 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0622951 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATTTCCA ATTCACTGAC TAAACGCAGA AGTTTAGTAT TCTTCCCCTA TCTTGCGCTG
CTGAGTATGC TCGGATTTTT GGCCACAGAC ATGTATCTTC CTGCATTCAA TCAGATTGAA
TCTAGTTTGA ACACGTCCGC CAGTTTGGTG GCCATGACCC TTACCTGCTT TTTGGGTGGT
CTCGCCATTG GGCAACTGGC ATATGGCAGC CTTTGCGACA AATTTGGCAA GCGAAACACA
CTAATGGCTG GCCTTGGTGT ATTTGCTGTA AGCAGCATTT TGCTGGGGTT TACCGAAAAT
ATCAGTGTCT TTTTTGTGCT CAGGGTTATT CAAGCATTCG GTGCATGCAG TGCCGCCGTC
ATCTGGCAAG CACTGGTGAT GGAAAAATTT GACGAAGGCG AGGCGAGAAA GGTGTTTTCG
TCGATTATGC CCTTGGTTGC TCTGTCTCCA GCACTGGCGC CTTTGATGGG AGCCTGGGTC
AGCGAGCAGT TTGGCTGGCG TGCCATCTTC ATCATCCTGG CCATTGTTGG GCTATTACTG
GCCGCCATGA CACCAGCGCT GGCGAAAGAA TCCCGCACTC GCAGCCAATC CGAGCCTATT
CTTGTTAAGA ACATCCTGAA AAACCGTGCT TTTCAGAATA ACGTGGCGAT ATTTGGGGCC
TGCAGTGCTG CCTTCTTTTG CTATCTGACA TTGTGGCCTG CTGTGATGCA ACACCATGGC
TACGCTGCTG CAGAAATTGG GCTCAGTTTT ATTCCTCAAA CCCTGGCATT TATGCTGGGC
GGGTTTGCCT GCAAAAAAGC ATTGCACTCC CATAGCCCTG AAGCTATCAA GAACATGCTC
ATCACAGGGT TTGTGGTGTT GTCTCTGGTG CTTTTTCTGT TAACGCAACT CGGTGCGGGG
ATCCTGGCCG TGCTTTGGGT GTTTGCAGCC CTTGCCGCAA TTAATGGTGC TGTTTATCCC
TTGCTGGTAA CTGACGCCCT GGCGCCATTC TCCAACAACG CTACCAAGGC TGCCGGTTGG
CAAAACTTCC TGCAATTGGG TATGGCGTTT ATTGCGTCAG CAGCTGTAGC CCTGATTGCC
CATTGGTTTG AAAAGGCTAT CGGCACCGGT ATTCTCGTGT GCGCTGCCAT AGTGCTCGTG
GCGTGGTGGC GTATGAACTG GAGTACCTGG CGTGGTAGTT GGTGTTTCCC GGACCCCGCC
AGAATGGGGG TCCTACGGAC TGAAAAGCGT GAACATTCCG ATAACGACAC TAAAACGCAC
GGTGTCTGCA ACGTCAGTAG TCAACAGAAA GACACTGACT GA
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| Protein sequence | MISNSLTKRR SLVFFPYLAL LSMLGFLATD MYLPAFNQIE SSLNTSASLV AMTLTCFLGG
LAIGQLAYGS LCDKFGKRNT LMAGLGVFAV SSILLGFTEN ISVFFVLRVI QAFGACSAAV
IWQALVMEKF DEGEARKVFS SIMPLVALSP ALAPLMGAWV SEQFGWRAIF IILAIVGLLL
AAMTPALAKE SRTRSQSEPI LVKNILKNRA FQNNVAIFGA CSAAFFCYLT LWPAVMQHHG
YAAAEIGLSF IPQTLAFMLG GFACKKALHS HSPEAIKNML ITGFVVLSLV LFLLTQLGAG
ILAVLWVFAA LAAINGAVYP LLVTDALAPF SNNATKAAGW QNFLQLGMAF IASAAVALIA
HWFEKAIGTG ILVCAAIVLV AWWRMNWSTW RGSWCFPDPA RMGVLRTEKR EHSDNDTKTH
GVCNVSSQQK DTD
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